Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22550 and PS417_22555 are separated by 204 nucleotidesPS417_22555 and PS417_22565 are separated by 257 nucleotidesPS417_22565 and PS417_22570 are separated by 350 nucleotidesPS417_22570 and PS417_22575 are separated by 89 nucleotides PS417_22550: PS417_22550 - ATP-binding protein, at 4,882,471 to 4,883,949 _22550 PS417_22555: PS417_22555 - chemotaxis protein, at 4,884,154 to 4,886,043 _22555 PS417_22565: PS417_22565 - formyltetrahydrofolate deformylase, at 4,886,301 to 4,887,149 _22565 PS417_22570: PS417_22570 - H-NS histone, at 4,887,500 to 4,887,874 _22570 PS417_22575: PS417_22575 - exonuclease I, at 4,887,964 to 4,889,391 _22575
Group Condition PS417_22550 PS417_22555 PS417_22565 PS417_22570 PS417_22575
phage Wcs_1 -1.1 -1.0 -1.6 -4.2 -1.7
phage P. simiae OR1 MOI 0.1 -1.3 -0.5 -1.7 -4.3 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -0.2 -4.9 -1.9 -0.4
solid stress Fraxetin 1 mM; solid stress -0.0 -0.1 -2.1 -4.6 -0.7
soil soil sample 8; outgrowth in LB -0.0 +0.1 -2.8 -4.1 -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.1 -0.1 -1.7 -4.6 -1.1
supernatant control Vogels_fungal_media 0.1X -0.0 -0.1 -3.9 -2.6 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.2 -4.9 -1.3 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 -0.4 -4.4 -1.5 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.2 -4.1 -1.4 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.6 -1.0 -4.8 -2.2 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.6 -4.8 -1.3 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -0.1 -4.0 -2.4 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -0.0 -4.7 -1.6 -0.5
soil soil sample 4; outgrowth in LB +0.0 +0.3 -2.7 -3.9 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 +0.1 -4.9 -1.5 -0.2
soil soil sample 5; outgrowth in LB +0.8 +0.1 -2.7 -4.0 -0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.2 +0.1 -4.2 +0.5 -1.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +0.1 -1.6 -4.0 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -0.1 -4.7 +1.2 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.5 -1.3 -4.8 +0.2 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.2 -1.7 -4.0 +0.5 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.3 -0.6 -4.8 +0.2 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.8 -0.9 -4.9 -0.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.8 -2.5 -2.4 -0.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +2.9 -1.3 -4.8 +0.1 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +2.3 -2.3 -4.0 +1.2 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +2.0 -1.1 -4.7 +1.6 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +2.0 -1.2 -4.9 +1.3 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 -0.7 -4.8 +1.2 +0.5
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