Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22545 and PS417_22550 are separated by 4 nucleotidesPS417_22550 and PS417_22555 are separated by 204 nucleotidesPS417_22555 and PS417_22565 are separated by 257 nucleotidesPS417_22565 and PS417_22570 are separated by 350 nucleotides PS417_22545: PS417_22545 - hypothetical protein, at 4,882,011 to 4,882,466 _22545 PS417_22550: PS417_22550 - ATP-binding protein, at 4,882,471 to 4,883,949 _22550 PS417_22555: PS417_22555 - chemotaxis protein, at 4,884,154 to 4,886,043 _22555 PS417_22565: PS417_22565 - formyltetrahydrofolate deformylase, at 4,886,301 to 4,887,149 _22565 PS417_22570: PS417_22570 - H-NS histone, at 4,887,500 to 4,887,874 _22570
Group Condition PS417_22545 PS417_22550 PS417_22555 PS417_22565 PS417_22570
phage P. simiae OR1 MOI 0.1 N.D. -1.3 -0.5 -1.7 -4.3
phage Wcs_1 N.D. -1.1 -1.0 -1.6 -4.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.3 -0.2 -4.9 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.7 -0.4 -4.4 -1.5
soil soil sample 8; outgrowth in LB N.D. -0.0 +0.1 -2.8 -4.1
solid stress Fraxetin 1 mM; solid stress N.D. -0.0 -0.1 -2.1 -4.6
supernatant control Vogels_fungal_media 0.1X N.D. -0.0 -0.1 -3.9 -2.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 +0.2 -4.9 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.6 -1.0 -4.8 -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 -0.6 -4.8 -1.3
soil soil sample 4; outgrowth in LB N.D. +0.0 +0.3 -2.7 -3.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. +0.1 -0.1 -1.7 -4.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.2 -0.1 -4.0 -2.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.1 +0.1 -4.9 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.2 -0.0 -4.7 -1.6
soil soil sample 5; outgrowth in LB N.D. +0.8 +0.1 -2.7 -4.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.6 -0.5 -4.9 -0.4
motility inner cut, LB soft agar motility assay N.D. -0.6 -0.0 -5.0 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.9 +0.1 -1.6 -4.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.5 -1.3 -4.8 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.6 -0.1 -4.7 +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.8 -0.9 -4.9 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.2 -1.7 -4.0 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.3 -0.6 -4.8 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.8 -2.5 -2.4 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +1.1 -0.7 -4.8 +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +2.9 -1.3 -4.8 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +2.0 -1.2 -4.9 +1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +2.3 -2.3 -4.0 +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +2.0 -1.1 -4.7 +1.6
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