Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22480 and PS417_22485 are separated by 415 nucleotidesPS417_22485 and PS417_22490 are separated by 69 nucleotidesPS417_22490 and PS417_22495 are separated by 3 nucleotidesPS417_22495 and PS417_22500 are separated by 886 nucleotides PS417_22480: PS417_22480 - ferritin, at 4,866,803 to 4,867,276 _22480 PS417_22485: PS417_22485 - cold-shock protein, at 4,867,692 to 4,868,294 _22485 PS417_22490: PS417_22490 - hypothetical protein, at 4,868,364 to 4,868,570 _22490 PS417_22495: PS417_22495 - histidine triad (HIT) protein, at 4,868,574 to 4,868,999 _22495 PS417_22500: PS417_22500 - porin, at 4,869,886 to 4,871,184 _22500
Group Condition PS417_22480 PS417_22485 PS417_22490 PS417_22495 PS417_22500
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. N.D. -0.9 -2.4
carbon source Gly-Glu (C) -0.2 N.D. N.D. -0.4 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. N.D. -0.2 -2.4
carbon source Gly-Glu (C) -0.0 N.D. N.D. -0.1 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. N.D. -0.7 -1.3
nitrogen source Uridine (N) +0.1 N.D. N.D. -0.5 -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. N.D. -0.9 -0.7
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. N.D. -0.5 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 N.D. N.D. +0.0 -1.6
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. N.D. -0.2 -1.2
soil soil sample 8; outgrowth in LB +0.0 N.D. N.D. -1.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. N.D. -0.2 -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 N.D. N.D. -0.8 -0.6
carbon source Carbon source L-Citrulline 5 mM +0.2 N.D. N.D. -0.9 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 N.D. N.D. -0.6 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 N.D. N.D. -1.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 N.D. N.D. +0.4 -0.9
phage P. simiae OR Antrim MOI 0.1 +0.7 N.D. N.D. -0.9 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.0 N.D. N.D. -0.6 +0.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.0 N.D. N.D. +1.3 -0.2
phage P. simiae Grant Run MOI 0.1 +0.7 N.D. N.D. +0.6 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.2 N.D. N.D. -0.4 +1.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 N.D. N.D. +1.8 -0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.0 N.D. N.D. +1.4 -0.0
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.0 N.D. N.D. +1.3 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 N.D. N.D. +1.5 -0.0
motility inner cut, LB soft agar motility assay +0.6 N.D. N.D. +0.7 +0.3
carbon source L-Glutamine (C) +0.2 N.D. N.D. +2.1 -0.0
carbon source L-Glutamine (C) +0.1 N.D. N.D. +2.6 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.2 N.D. N.D. +0.4 +2.6
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