Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4390 and GFF4391 overlap by 4 nucleotidesGFF4391 and GFF4392 overlap by 8 nucleotidesGFF4392 and GFF4393 are separated by 9 nucleotidesGFF4393 and GFF4394 overlap by 4 nucleotides GFF4390 - Membrane-fusion protein, at 19,584 to 20,471 GFF4390 GFF4391 - Acriflavin resistance protein, at 20,468 to 23,791 GFF4391 GFF4392 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 23,784 to 25,268 GFF4392 GFF4393 - Uncharacterized ABC1 family protein XCC_1720, at 25,278 to 27,026 GFF4393 GFF4394 - FIG00613342: Bacterial patatin-like phospholipase domain containing protein, at 27,023 to 27,997 GFF4394
Group Condition GFF4390 GFF4391 GFF4392 GFF4393 GFF4394
phage phage_bap4 +0.0 -0.1 -0.1 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.1 +0.0 +0.0 -0.1
complex community Community=Kojac gum; Passage=4 +0.0 -0.0 -0.1 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.1 -0.1 -0.1 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.1 +0.0 +0.1 -0.0 -0.0
phage phage_bap4 +0.1 -0.1 +0.2 -0.1 -0.0
no phage control no phage control +0.2 +0.0 -0.2 -0.0 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 +0.0 +0.2 -0.0 -0.0
phage phage_bap4 +0.0 +0.0 -0.1 +0.0 +0.1
complex community Community=Kojac gum; Passage=1 +0.1 +0.1 -0.2 +0.1 +0.1
no phage control no phage control +0.2 +0.0 -0.1 +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 -0.0 +0.2 -0.0 -0.0
no phage control no phage control +0.2 +0.0 -0.1 +0.0 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.2 +0.0 +0.1 +0.0 -0.1
complex community Community=guar; Passage=4 +0.3 +0.1 -0.0 -0.0 -0.0
complex community Community=Locust bean gum; Passage=4 +0.2 +0.2 -0.2 +0.2 -0.1
phage phage_bap4 +0.1 -0.0 +0.3 -0.0 -0.0
complex community Community=Locust bean gum; Passage=4 +0.1 +0.1 +0.1 -0.0 +0.1
phage phage_bap4 +0.3 +0.0 +0.0 +0.0 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.3 -0.0 -0.0 +0.1 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.0 +0.0 +0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.0 +0.2 +0.0 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.0 +0.1 +0.1 +0.1
complex community Community=arabino-guar; Passage=4 +0.2 +0.1 -0.2 +0.2 +0.2
complex community Community=arabino-guar; Passage=4 +0.4 +0.0 -0.2 +0.2 +0.0
complex community Community=arabino-guar; Passage=4 +0.3 -0.0 +0.1 +0.1 +0.0
complex community Community=guar; Passage=4 +0.4 -0.0 +0.2 +0.1 -0.0
complex community Community=Locust bean gum; Passage=4 +0.3 +0.1 +0.2 -0.0 +0.1
complex community Community=Locust bean gum; Passage=4 +0.5 +0.0 +0.2 +0.2 -0.1
complex community Community=arabino-guar; Passage=4 +0.4 +0.0 +0.2 +0.3 +0.0
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