Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4388 and GFF4389 are separated by 436 nucleotidesGFF4389 and GFF4390 are separated by 457 nucleotidesGFF4390 and GFF4391 overlap by 4 nucleotidesGFF4391 and GFF4392 overlap by 8 nucleotides GFF4388 - Type IV secretory pathway, protease TraF, at 16,096 to 16,695 GFF4388 GFF4389 - Type IV secretory pathway, VirD2 components (relaxase), at 17,132 to 19,126 GFF4389 GFF4390 - Membrane-fusion protein, at 19,584 to 20,471 GFF4390 GFF4391 - Acriflavin resistance protein, at 20,468 to 23,791 GFF4391 GFF4392 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 23,784 to 25,268 GFF4392
Group Condition GFF4388 GFF4389 GFF4390 GFF4391 GFF4392
phage phage_bap4 -0.2 -0.1 +0.1 -0.0 +0.1
complex community Community=guar; Passage=4 -0.3 +0.3 +0.0 +0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 +0.0 +0.1 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.0 +0.2 +0.0 +0.2
phage phage_bap4 -0.1 -0.1 +0.1 -0.0 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.1 -0.2 +0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.1 +0.1 +0.1 -0.1
no phage control no phage control +0.1 +0.2 +0.2 +0.0 -0.1
no phage control no phage control +0.2 +0.1 +0.2 +0.0 -0.2
complex community Community=Kojac gum; Passage=4 +0.3 +0.2 +0.0 -0.0 -0.1
complex community Community=Kojac gum; Passage=1 +0.3 +0.1 +0.1 +0.1 -0.2
no phage control no phage control +0.2 +0.1 +0.2 +0.0 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.3 +0.1 +0.1 +0.0 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.0 +0.0 +0.0 +0.2
complex community Community=guar; Passage=4 +0.4 +0.1 +0.0 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.1 +0.2 -0.0 +0.2
phage phage_bap4 +0.1 +0.2 +0.3 +0.0 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 +0.2 +0.1 +0.0 +0.1
complex community Community=guar; Passage=4 -0.2 +0.2 +0.4 -0.0 +0.2
complex community Community=arabino-guar; Passage=4 +0.4 +0.1 +0.2 +0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.4 +0.1 +0.1 +0.0 +0.0
complex community Community=arabino-guar; Passage=4 +0.0 +0.1 +0.4 +0.0 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.2 +0.1 +0.2 +0.0 +0.1
complex community Community=arabino-guar; Passage=4 +0.3 -0.1 +0.3 -0.0 +0.1
complex community Community=Locust bean gum; Passage=4 +0.4 -0.0 +0.1 +0.1 +0.1
complex community Community=guar; Passage=4 +0.1 +0.3 +0.3 +0.1 -0.0
complex community Community=Locust bean gum; Passage=4 +0.6 +0.1 +0.2 +0.2 -0.2
complex community Community=arabino-guar; Passage=4 +0.5 +0.2 +0.4 +0.0 -0.2
complex community Community=Locust bean gum; Passage=4 +0.3 +0.3 +0.3 +0.1 +0.2
complex community Community=Locust bean gum; Passage=4 +0.5 +0.2 +0.5 +0.0 +0.2
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