Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF4387 and GFF4388 overlap by 4 nucleotidesGFF4388 and GFF4389 are separated by 436 nucleotidesGFF4389 and GFF4390 are separated by 457 nucleotidesGFF4390 and GFF4391 overlap by 4 nucleotides GFF4387 - Glycosidases, at 15,554 to 16,099 GFF4387 GFF4388 - Type IV secretory pathway, protease TraF, at 16,096 to 16,695 GFF4388 GFF4389 - Type IV secretory pathway, VirD2 components (relaxase), at 17,132 to 19,126 GFF4389 GFF4390 - Membrane-fusion protein, at 19,584 to 20,471 GFF4390 GFF4391 - Acriflavin resistance protein, at 20,468 to 23,791 GFF4391
Group Condition GFF4387 GFF4388 GFF4389 GFF4390 GFF4391
phage phage_bap4 -0.1 -0.2 -0.1 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.2 +0.0 +0.2 +0.0
complex community Community=guar; Passage=4 +0.1 -0.3 +0.3 +0.0 +0.0
complex community Community=arabino-guar; Passage=4 -0.2 +0.0 +0.1 +0.4 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.2 +0.1 +0.2 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.1 +0.1 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.3 +0.1 +0.1 +0.0
complex community Community=guar; Passage=4 -0.0 -0.2 +0.2 +0.4 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.2 +0.1 -0.2 +0.1
no phage control no phage control +0.3 -0.2 +0.1 +0.2 +0.0
vitamin M9 with Supernatant from Cyptococcus +0.3 +0.1 -0.0 +0.2 -0.1
complex community Community=guar; Passage=4 -0.0 +0.4 +0.1 +0.0 -0.1
phage phage_bap4 -0.1 +0.1 +0.2 +0.3 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.4 +0.1 +0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.1 +0.1 +0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.1 +0.1 +0.2 -0.0
complex community Community=Locust bean gum; Passage=4 -0.0 +0.4 -0.0 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.3 +0.0 +0.1 +0.3 -0.0
complex community Community=Kojac gum; Passage=1 +0.2 +0.3 +0.1 +0.1 +0.1
complex community Community=arabino-guar; Passage=4 -0.0 +0.4 +0.1 +0.2 +0.1
no phage control no phage control +0.2 +0.2 +0.1 +0.2 +0.0
no phage control no phage control +0.4 +0.1 +0.2 +0.2 +0.0
no phage control no phage control +0.3 +0.2 +0.1 +0.2 +0.0
complex community Community=arabino-guar; Passage=4 +0.3 +0.3 -0.1 +0.3 -0.0
complex community Community=Kojac gum; Passage=4 +0.6 +0.3 +0.2 +0.0 -0.0
complex community Community=arabino-guar; Passage=4 +0.1 +0.5 +0.2 +0.4 +0.0
complex community Community=Locust bean gum; Passage=4 +0.2 +0.6 +0.1 +0.2 +0.2
complex community Community=guar; Passage=4 +0.5 +0.1 +0.3 +0.3 +0.1
complex community Community=Locust bean gum; Passage=4 +0.3 +0.3 +0.3 +0.3 +0.1
complex community Community=Locust bean gum; Passage=4 +0.3 +0.5 +0.2 +0.5 +0.0
remove
GFF4387
plot		 remove
GFF4388
plot		 remove
GFF4389		 remove
GFF4390
plot		 remove
GFF4391
plot