Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22375 and PS417_22380 are separated by 95 nucleotidesPS417_22380 and PS417_22385 are separated by 72 nucleotidesPS417_22385 and PS417_22390 are separated by 236 nucleotidesPS417_22390 and PS417_22395 are separated by 350 nucleotides PS417_22375: PS417_22375 - cold-shock protein, at 4,849,464 to 4,849,676 _22375 PS417_22380: PS417_22380 - hypothetical protein, at 4,849,772 to 4,850,260 _22380 PS417_22385: PS417_22385 - quinolinate synthase A, at 4,850,333 to 4,851,391 _22385 PS417_22390: PS417_22390 - lactate dehydrogenase, at 4,851,628 to 4,853,202 _22390 PS417_22395: PS417_22395 - tRNA-Lys, at 4,853,553 to 4,853,628 _22395
Group Condition PS417_22375 PS417_22380 PS417_22385 PS417_22390 PS417_22395
stress R2A with Polymyxin B sulfate 0.003 mg/ml -4.8 -1.2 -0.0 +0.2 N.D.
root root sample 6; outgrowth in LB -3.1 -0.8 -0.6 -0.1 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -3.3 -0.7 -0.4 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -3.4 +0.3 -1.3 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.5 -0.1 +0.4 -0.1 N.D.
carbon source Putrescine (C) -0.9 -0.9 -2.1 -0.2 N.D.
soil soil sample 3; outgrowth in LB -2.1 -1.1 -0.6 -0.3 N.D.
carbon source L-Valine (C) -2.6 -0.1 -1.1 -0.1 N.D.
carbon source Putrescine (C) -1.1 -0.6 -1.8 -0.3 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -3.6 -0.2 +0.2 -0.2 N.D.
carbon source D-Sorbitol (C) -1.2 -0.1 -2.3 -0.0 N.D.
carbon source D-Mannose (C) -1.7 -0.3 -1.4 -0.2 N.D.
carbon source D-Mannose (C) -0.9 -0.7 -1.5 -0.3 N.D.
carbon source L-Valine (C) -2.2 -0.5 -0.5 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -1.5 -0.8 -0.9 -0.3 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -2.4 -0.6 -0.1 -0.2 N.D.
carbon source NAG (C) +0.1 +0.7 -3.8 +0.1 N.D.
nitrogen source Inosine (N) +0.3 +0.5 -3.7 +0.1 N.D.
carbon source Cytidine (C) +0.5 +0.1 -3.1 -0.0 N.D.
nitrogen source Urea (N) -0.3 +0.6 -2.5 -0.1 N.D.
nitrogen source Cytidine (N) +0.3 +0.3 -2.9 +0.2 N.D.
carbon source NAG (C) +0.7 +0.6 -3.4 +0.2 N.D.
carbon source Cytidine (C) +0.3 +0.6 -2.8 +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +1.5 +0.3 -1.7 -0.1 N.D.
carbon source Carbon source L-Citrulline 5 mM +2.0 +0.3 -1.7 +0.1 N.D.
carbon source Carbon source L-Citrulline 10 mM +1.6 +0.6 -1.4 +0.1 N.D.
carbon source Gly-Glu (C) +1.8 +1.1 -1.2 +0.2 N.D.
carbon source Gly-Glu (C) +2.2 +1.1 -1.1 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +0.8 +0.6 +0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.8 +0.7 +0.7 +0.5 N.D.
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PS417_22375
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PS417_22380
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