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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF435 and GFF436 are separated by 46 nucleotides
GFF436 and GFF437 are separated by 193 nucleotides
GFF437 and GFF438 overlap by 40 nucleotides
GFF438 and GFF439 overlap by 4 nucleotides
GFF435 - hypothetical protein, at 473,265 to 473,816
GFF435
GFF436 - LrgA-associated membrane protein LrgB, at 473,863 to 474,594
GFF436
GFF437 - Antiholin-like protein LrgA, at 474,788 to 475,210
GFF437
GFF438 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 475,171 to 476,187
GFF438
GFF439 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 476,184 to 477,161
GFF439
Group
Condition
GFF435
GFF436
GFF437
GFF438
GFF439
complex community
Community=guar; Passage=4
-0.3
-0.2
-0.6
-1.3
-1.2
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.7
-0.3
-0.9
-0.8
complex community
Community=guar; Passage=4
-0.2
+0.6
-0.5
-1.4
-1.2
complex community
Community=arabino-guar; Passage=4
+0.1
+0.1
-0.2
-1.8
-0.7
complex community
Community=Locust bean gum; Passage=4
+0.1
+0.7
-0.6
-1.1
-1.3
complex community
Community=guar; Passage=4
+0.1
-0.4
-0.3
-0.7
-0.6
complex community
Community=guar; Passage=4
+0.3
-0.1
-0.2
-0.8
-1.0
complex community
Community=Locust bean gum; Passage=4
-0.3
+1.4
-0.6
-0.5
-1.2
complex community
Community=arabino-guar; Passage=4
-0.1
+0.1
-0.0
-0.5
-0.5
complex community
Community=arabino-guar; Passage=4
+0.2
-0.1
-0.2
-0.5
-0.4
phage
phage_bap4
-0.0
-0.0
-0.8
-0.1
+0.0
complex community
Community=arabino-guar; Passage=4
-0.3
+0.9
-0.8
-0.1
-0.5
complex community
Community=Locust bean gum; Passage=1
-0.4
+0.1
-0.4
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.6
+0.0
-0.2
+0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.0
-0.3
-0.4
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.4
-0.2
+0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
-0.1
-0.4
-0.1
+0.3
phage
phage_bap4
+0.2
+0.2
-0.3
-0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.3
+1.3
+0.1
-0.5
-0.4
complex community
Community=Kojac gum; Passage=4
+0.1
+0.1
+0.3
-0.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
+0.5
+0.0
-0.1
-0.0
complex community
Community=Kojac gum; Passage=1
-0.3
+0.4
+0.0
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.4
-0.2
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
+0.2
+0.0
+0.0
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
+0.4
+0.2
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.0
-0.2
+0.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
+0.3
-0.0
+0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.7
-0.3
+0.3
+0.1
no phage control
no phage control
+0.1
+0.5
+0.2
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.3
+0.4
+0.0
+0.3
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