Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22340	PS417_22345	PS417_22350	PS417_22355	PS417_22360
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.3	-5.6	-4.5	-4.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.1	-5.6	-3.2	-2.8
nitrogen source	Glycine (N)	+0.2	+0.1	-4.5	-2.7	-2.7
carbon source	Gly-Glu (C)	+0.5	+0.2	-2.3	-2.3	-3.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	-1.7	-1.0	-2.7
carbon source	Gly-Glu (C)	-0.4	+0.4	-1.8	-1.8	-2.2
root	root sample 6; outgrowth in LB	-0.6	-0.4	-1.0	-0.4	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-0.2	-1.3	-0.9	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.3	-0.8	-1.1	-1.2
soil	soil sample 6; outgrowth in LB	-0.3	-0.4	-1.9	+0.1	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-1.2	-0.8	-0.1	-0.2
soil	soil sample 2; outgrowth in LB	-0.1	-0.1	-1.3	-0.3	-1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	-0.1	-0.7	-0.4	+0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.6	-0.8	-0.1	-0.4	-0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.5	-0.7	-0.4	-1.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.4	-0.8	-0.6	-1.1
seeds	Growth on radish seeds for 72 hours	-0.6	-1.3	+0.2	-0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.1	-1.5	+0.1	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.1	+0.5	-0.2	-0.5	-0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.6	-0.3	-0.3	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.4	+0.4	+0.1	-0.8
soil	soil sample 3; outgrowth in LB	+0.3	-0.4	-1.2	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	-1.1	-0.5	-0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.4	+0.5	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.4	-1.3	+0.5	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.1	-0.5	-1.0	+0.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.7	-0.3	+0.4	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.6	-0.8	+0.5	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.5	+0.8	+0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.8	+1.0	+0.1	+0.1