Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22310	PS417_22315	PS417_22320	PS417_22325	PS417_22330
supernatant control	Vogels_fungal_media 0.1X	-0.8	-0.5	+0.1	-0.5	-0.2
motility	inner cut, LB soft agar motility assay	-0.5	-0.4	+0.1	+0.0	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-1.5	+0.2	-0.5	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-1.3	+0.3	+0.2	-0.7
seeds	Growth on radish seeds for 72 hours	+0.5	-0.2	+0.1	-0.1	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.9	-0.1	-0.0	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-1.8	+0.0	+0.7	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.9	-0.2	+0.2	-0.4
soil	soil sample 7; outgrowth in LB	+0.2	-1.3	+0.2	+0.4	+0.1
nophagecontrol	Only library	-0.5	+0.6	-0.5	-0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	+0.0	+0.0	+1.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.4	-0.2	+0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.3	+0.2	+0.3	-0.6
carbon source	L-Valine (C)	-0.1	+1.4	-0.2	-0.1	-0.2
stress	Gentamicin 0.008 mg/ml	+0.4	+0.6	+0.5	+0.1	-0.6
rhizosphere	rhizosphere sample 8; outgrowth in LB	+1.0	-0.5	+0.3	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.3	+0.4	+0.9	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.1	+0.0	+1.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+1.6	-0.2	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.4	+0.2	+1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+1.2	+0.6	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.3	+0.3	-0.2	+1.6
soil	soil sample 5; outgrowth in LB	+1.2	+0.2	-0.0	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	+0.4	+0.2	+1.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.7	+0.1	+0.3	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.2	+0.1	+0.7	+1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.4	+0.1	+0.5	+0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.8	-0.5	+0.3	+0.1	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	+0.2	+1.1	+0.7
root	root sample 6; outgrowth in LB	+1.3	+0.6	+0.0	+0.4	+0.3