Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22295	PS417_22300	PS417_22305	PS417_22310	PS417_22315
phage	JP1 MOI 10	N.D.	-1.9	-0.9	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.3	-0.2	+0.3	-1.5
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	N.D.	-1.8	+0.0	-0.1	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.5	-0.2	-0.2	-1.3
supernatant control	Vogels_fungal_media 0.1X	N.D.	-0.5	-0.3	-0.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.1	-0.9	-0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.4	-1.5	-0.2	-0.1
nophagecontrol	Only library	N.D.	-1.4	-0.1	-0.5	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.2	+0.3	-0.0	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	+0.1	+0.3	-0.9
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-1.5	+0.2	-0.2	+0.3
soil	soil sample 6; outgrowth in LB	N.D.	-0.6	-0.8	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	-0.8	+0.3	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+1.2	+0.2	-0.4	-1.8
soil	soil sample 7; outgrowth in LB	N.D.	+0.4	+0.1	+0.2	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-0.7	-0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.5	-0.4	+0.3	+1.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	-0.5	-0.2	+1.0	-0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.4	-0.3	+1.8	-0.5
root	root sample 6; outgrowth in LB	N.D.	-0.1	-1.3	+1.3	+0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-0.7	+0.5	+0.4	+0.4
soil	soil sample 5; outgrowth in LB	N.D.	-0.3	-0.5	+1.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.8	+0.7	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.6	-1.0	+0.8	+0.4
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+1.0	+0.5	-0.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.8	+0.3	+0.1	+1.6
phage	JP1 MOI 1	N.D.	+0.9	+0.6	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.2	-0.3	+0.1	+0.6
seeds	Growth on radish seeds for 72 hours	N.D.	+1.7	+0.6	-0.1	-0.4
carbon source	L-Valine (C)	N.D.	+1.0	-0.4	-0.1	+1.4