Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4350 and GFF4351 are separated by 18 nucleotidesGFF4351 and GFF4352 are separated by 22 nucleotidesGFF4352 and GFF4353 are separated by 34 nucleotidesGFF4353 and GFF4354 are separated by 39 nucleotides GFF4350 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 272,783 to 273,478 GFF4350 GFF4351 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 273,497 to 274,678 GFF4351 GFF4352 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 274,701 to 276,257 GFF4352 GFF4353 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 276,292 to 277,440 GFF4353 GFF4354 - KEGG: phosphoglycerate mutase , at 277,480 to 278,061 GFF4354
Group Condition GFF4350 GFF4351 GFF4352 GFF4353 GFF4354
complex community Community=guar; Passage=4 N.D. +0.3 -3.1 +0.1 N.D.
complex community Community=Locust bean gum; Passage=4 N.D. -0.0 -2.6 -0.0 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.0 -2.6 -0.0 N.D.
complex community Community=guar; Passage=4 N.D. +0.1 -2.7 -0.0 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.0 -2.3 -0.1 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.3 -2.5 -0.1 N.D.
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.1 -2.2 +0.1 N.D.
complex community Community=arabino-guar; Passage=4 N.D. -0.5 -2.0 +0.5 N.D.
complex community Community=guar; Passage=4 N.D. +0.2 -2.1 -0.1 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.2 -1.3 -0.2 N.D.
complex community Community=Locust bean gum; Passage=4 N.D. +0.7 -2.8 +0.4 N.D.
phage phage_bap4 N.D. -0.0 -1.5 -0.1 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.3 -1.8 -0.1 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.0 -1.5 -0.1 N.D.
no phage control no phage control N.D. +0.2 -1.7 +0.0 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.0 -1.4 -0.1 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.0 -1.6 +0.1 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.2 -1.7 +0.1 N.D.
phage phage_bap4 N.D. +0.0 -1.3 -0.1 N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. +0.0 -1.2 -0.1 N.D.
phage phage_bap4 N.D. +0.0 -1.3 +0.1 N.D.
phage phage_bap4 N.D. -0.1 -0.9 -0.1 N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. -0.0 -0.7 -0.3 N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. +0.3 -1.1 -0.0 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.1 -0.8 -0.0 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.3 -0.6 -0.1 N.D.
complex community Community=arabino-guar; Passage=4 N.D. -0.1 +0.7 +0.2 N.D.
complex community Community=arabino-guar; Passage=4 N.D. +0.2 +1.4 +0.1 N.D.
complex community Community=guar; Passage=4 N.D. +0.3 +1.8 +0.0 N.D.
complex community Community=arabino-guar; Passage=4 N.D. +0.7 +1.3 +0.4 N.D.
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