Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22245	PS417_22250	PS417_22255	PS417_22260	PS417_22265
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.6	N.D.	-1.2	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-1.3	N.D.	-0.7	-0.3
stress	LB_noSalt with Chloride 1100 mM	+0.0	-1.9	N.D.	-0.2	-0.2
phage	P. simiae ORA MOI 1	-0.7	-0.8	N.D.	-0.4	-0.2
soil	soil sample 4; outgrowth in LB	-0.3	-1.0	N.D.	-0.3	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	-0.1	N.D.	-0.9	-0.3
motility	inner cut, LB soft agar motility assay	+0.2	-0.5	N.D.	-1.4	-0.2
phage	JP1 MOI 0.1	+0.1	-1.5	N.D.	+0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.2	N.D.	-0.4	-0.1
phage	P. simiae Grant Run MOI 0.1	-0.1	-1.0	N.D.	-0.7	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-0.9	N.D.	-0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.3	N.D.	-1.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.1	N.D.	-1.6	-0.1
phage	JP1 MOI 10	-0.5	-0.5	N.D.	-0.7	-0.1
motility	inner cut, LB soft agar motility assay	+0.1	-0.1	N.D.	-1.7	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.2	N.D.	-0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.7	N.D.	-1.4	+0.2
motility	outer cut, LB soft agar motility assay	+0.1	-0.4	N.D.	-1.1	-0.2
phage	P. simiae OR Antrim MOI 0.1	-0.3	-0.6	N.D.	+0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.9	N.D.	-0.5	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.4	N.D.	-1.1	-0.0
carbon source	L-Valine (C)	-0.2	+0.7	N.D.	-0.2	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-1.4	N.D.	+0.8	+0.1
phage	P. simiae OR Antrim MOI 10	+0.2	-0.9	N.D.	+0.6	-0.4
carbon source	L-Valine (C)	-0.8	+0.7	N.D.	-0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.6	N.D.	-1.4	+0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.1	N.D.	-0.7	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	+0.4	N.D.	-0.7	+0.7
stress	methylglyoxal 0.032 vol%	-0.2	-0.2	N.D.	+1.5	+0.4
stress	Gentamicin 0.008 mg/ml	+0.7	+1.7	N.D.	-0.5	+0.4