Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22215 and PS417_22220 are separated by 352 nucleotidesPS417_22220 and PS417_22225 are separated by 105 nucleotidesPS417_22225 and PS417_22230 overlap by 4 nucleotidesPS417_22230 and PS417_22235 are separated by 111 nucleotides PS417_22215: PS417_22215 - membrane protein, at 4,816,252 to 4,816,563 _22215 PS417_22220: PS417_22220 - hypothetical protein, at 4,816,916 to 4,817,098 _22220 PS417_22225: PS417_22225 - MFS transporter, at 4,817,204 to 4,818,400 _22225 PS417_22230: PS417_22230 - class I peptide chain release factor, at 4,818,397 to 4,818,810 _22230 PS417_22235: PS417_22235 - aromatic amino acid transporter, at 4,818,922 to 4,820,343 _22235
Group Condition PS417_22215 PS417_22220 PS417_22225 PS417_22230 PS417_22235
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. -0.2 -0.5 +0.1
phage JP1 MOI 0.1 -1.2 N.D. +0.1 -0.3 +0.3
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.2 N.D. -0.4 -0.8 -0.1
seeds Growth on radish seeds for 72 hours -1.1 N.D. -0.2 +0.3 +0.1
carbon source L-Leucine (C) +0.3 N.D. -0.2 -0.9 +0.1
carbon source L-Valine (C) -0.6 N.D. +0.1 -1.2 +1.0
phage P. simiae OR Antrim MOI 0.1 -0.2 N.D. -0.8 +0.3 +0.3
stress Choline chloride 300 mM -0.3 N.D. +0.2 -0.6 +0.5
phage JP1 MOI 10 -0.7 N.D. +0.5 +0.3 +0.2
phage P. simiae OR1 MOI 0.1 +0.0 N.D. -0.7 +1.0 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. +0.6 +0.3 +0.1
carbon source L-Valine (C) -0.4 N.D. +0.2 -0.4 +1.1
soil soil sample 8; outgrowth in LB -0.4 N.D. -0.5 +1.6 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 N.D. +0.4 -0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 N.D. -0.4 +0.9 +0.1
soil soil sample 5; outgrowth in LB -0.5 N.D. +0.3 +1.3 +0.1
soil soil sample 7; outgrowth in LB -0.2 N.D. +0.2 +1.1 +0.2
soil soil sample 6; outgrowth in LB +0.1 N.D. -0.1 +1.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -0.1 +1.5 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. +0.1 +0.7 +0.2
soil soil sample 3; outgrowth in LB +0.2 N.D. +0.2 +0.8 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 N.D. -0.2 +1.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 N.D. -0.3 +1.9 +0.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 N.D. -0.0 +1.1 +0.4
rhizosphere rhizosphere sample 8; outgrowth in LB -0.5 N.D. +0.5 +1.8 +0.3
soil soil sample 2; outgrowth in LB +0.2 N.D. +0.4 +1.6 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 N.D. +0.2 +2.4 -0.0
soil soil sample 4; outgrowth in LB +0.3 N.D. +0.2 +1.8 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 N.D. +0.3 +2.1 -0.0
root root sample 6; outgrowth in LB +0.0 N.D. +0.8 +2.3 +0.0
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PS417_22215
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PS417_22220
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PS417_22230
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PS417_22235
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