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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4335 and GFF4336 overlap by 38 nucleotides
GFF4336 and GFF4337 are separated by 218 nucleotides
GFF4337 and GFF4338 are separated by 46 nucleotides
GFF4338 and GFF4339 are separated by 227 nucleotides
GFF4335 - DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31, at 116,439 to 117,029
GFF4335
GFF4336 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 116,992 to 117,810
GFF4336
GFF4337 - FIG001943: hypothetical protein YajQ, at 118,029 to 118,520
GFF4337
GFF4338 - Putative transport protein, at 118,567 to 119,931
GFF4338
GFF4339 - hypothetical protein, at 120,159 to 120,293
GFF4339
Group
Condition
GFF4335
GFF4336
GFF4337
GFF4338
GFF4339
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.4
+0.1
-1.8
-0.2
N.D.
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
-0.5
-0.0
-0.7
-0.5
N.D.
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
-0.4
-0.2
-0.5
-0.4
N.D.
phage
6H2_phage 10 MOI; agar plate assay
-0.0
-0.2
-0.7
-0.6
N.D.
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
+0.1
+0.0
-1.2
-0.3
N.D.
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.7
-0.0
-0.6
-0.0
N.D.
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.8
-0.0
-0.4
-0.2
N.D.
phage
6F2_phage 15 MOI
-0.2
-0.1
-0.5
-0.5
N.D.
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
-0.4
+0.1
-0.7
-0.3
N.D.
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
-0.6
+0.0
-0.5
-0.2
N.D.
phage
LB_plus_SM_buffer with P22_phage 15 MOI
+0.0
+0.7
-1.7
-0.2
N.D.
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
-0.3
+0.1
-0.7
-0.3
N.D.
phage
LB_plus_SM_buffer with Ffm_phage 15 MOI
+0.1
+0.1
-0.9
-0.4
N.D.
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.6
+0.3
-0.9
+0.1
N.D.
phage
LB_plus_SM_buffer with Br60_phage 0.000005 MOI
-0.5
+0.0
+0.1
-0.8
N.D.
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.3
-0.2
-0.8
+0.3
N.D.
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
+0.1
+0.0
-0.2
-0.8
N.D.
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
-0.1
+0.2
-0.8
-0.1
N.D.
phage
LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
-0.0
+0.0
+0.3
-1.1
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+0.2
+0.2
-0.8
-0.1
N.D.
phage
phi19h1_phage 15 MOI
-0.4
-0.1
-0.4
+0.3
N.D.
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
-0.5
-0.7
+0.7
-0.0
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
+0.4
+0.2
-0.3
-0.6
N.D.
phage
phi19h1_phage 15 MOI
-0.5
-0.2
+0.0
+0.4
N.D.
phage
LB_plus_SM_buffer with Ffm_phage 0.01875 MOI
+0.2
-0.2
+0.5
-0.4
N.D.
micoeukaryotes
C.elegans, mixed culture-2
+0.3
+0.1
+1.0
-0.3
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
-0.2
+0.3
+0.0
+1.0
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
-0.1
+0.1
+0.6
+0.6
N.D.
phage
Br60_phage 15 MOI
+0.4
+0.2
+0.4
+0.2
N.D.
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
-0.4
+0.4
+0.1
+1.4
N.D.
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