Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22180 and PS417_22185 are separated by 139 nucleotidesPS417_22185 and PS417_22190 are separated by 207 nucleotidesPS417_22190 and PS417_22195 are separated by 127 nucleotidesPS417_22195 and PS417_22200 are separated by 79 nucleotides PS417_22180: PS417_22180 - superoxide dismutase, at 4,804,521 to 4,805,117 _22180 PS417_22185: PS417_22185 - hypothetical protein, at 4,805,257 to 4,805,442 _22185 PS417_22190: PS417_22190 - diguanylate cyclase, at 4,805,650 to 4,807,701 _22190 PS417_22195: PS417_22195 - peptidase, at 4,807,829 to 4,809,172 _22195 PS417_22200: PS417_22200 - hypothetical protein, at 4,809,252 to 4,813,466 _22200
Group Condition PS417_22180 PS417_22185 PS417_22190 PS417_22195 PS417_22200
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.7 -1.9 +0.1
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. +0.1 -3.3 -0.0
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. N.D. -0.5 -2.8 +0.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -0.4 -2.7 +0.1
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. -0.0 -2.8 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.9 -0.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.7 -1.1 +0.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -0.3 -2.4 +0.1
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. -0.1 -2.4 -0.1
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. N.D. -0.1 -2.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.8 -1.5 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.9 -0.6 +0.2
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. +0.3 -2.4 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.5 -0.7 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.9 -0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.0 -0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.4 -0.5 -0.2
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. +0.3 -2.1 -0.2
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. -0.1 -1.8 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.6 -0.7 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.7 +0.1 -0.3
solid stress Fraxetin 2 mM; solid stress N.D. N.D. +0.2 -1.9 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.6 -0.3 +0.3
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. +0.3 -1.9 -0.0
solid stress Fraxetin 3 mM; solid stress N.D. N.D. +0.3 -1.8 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.0 +0.5 +0.2
root root sample 6; outgrowth in LB N.D. N.D. +1.0 -1.2 +0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +1.6 -0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.8 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +2.2 -0.3 +0.4
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