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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4331 and GFF4332 are separated by 75 nucleotides
GFF4332 and GFF4333 are separated by 105 nucleotides
GFF4333 and GFF4334 are separated by 29 nucleotides
GFF4334 and GFF4335 are separated by 21 nucleotides
GFF4331 - Oxidoreductase, GMC family, at 253,235 to 254,977
GFF4331
GFF4332 - Aldehyde dehydrogenase (EC 1.2.1.3), at 255,053 to 256,540
GFF4332
GFF4333 - Transcriptional regulator, LysR family, at 256,646 to 257,551
GFF4333
GFF4334 - Enoyl-CoA hydratase (EC 4.2.1.17), at 257,581 to 258,378
GFF4334
GFF4335 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 258,400 to 259,554
GFF4335
Group
Condition
GFF4331
GFF4332
GFF4333
GFF4334
GFF4335
complex community
Community=arabino-guar; Passage=4
-0.1
-1.0
-0.1
-1.8
N.D.
complex community
Community=guar; Passage=4
-0.3
+0.3
-2.2
-0.6
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.4
+0.8
-0.6
-3.2
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.2
-2.0
-0.3
-0.2
N.D.
complex community
Community=Kojac gum; Passage=4
+0.3
-0.6
-0.5
-1.3
N.D.
complex community
Community=guar; Passage=4
+0.5
-0.8
-0.7
-0.9
N.D.
complex community
Community=guar; Passage=4
+0.2
-0.7
-1.2
-0.2
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.3
-1.3
-0.5
-0.0
N.D.
complex community
Community=Locust bean gum; Passage=1
-0.3
+0.2
-0.4
-0.8
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.3
-0.3
-0.3
-0.7
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.9
-0.7
-0.9
N.D.
phage
phage_bap4
-0.1
-0.0
+0.3
-1.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
+0.1
-0.9
+0.3
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.2
-0.3
-0.6
N.D.
no phage control
no phage control
+0.1
-0.3
+0.2
-0.6
N.D.
complex community
Community=arabino-guar; Passage=4
+0.6
-0.8
-0.5
+0.2
N.D.
phage
phage_bap4
+0.3
+0.1
+0.2
-1.0
N.D.
complex community
Community=arabino-guar; Passage=4
-0.4
+0.4
-0.5
+0.1
N.D.
complex community
Community=arabino-guar; Passage=4
-0.2
-0.9
+0.4
+0.6
N.D.
phage
phage_bap4
-0.2
-0.2
+0.5
-0.3
N.D.
phage
phage_bap4
+0.2
-0.5
+0.3
-0.1
N.D.
phage
phage_bap4
-0.0
-0.4
+0.5
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.3
-0.5
+0.9
N.D.
no phage control
no phage control
+0.1
-0.3
+0.6
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.3
-0.3
+0.6
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
+0.4
-0.4
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
+0.3
-0.3
+0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
+0.4
-0.4
+0.5
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.1
+0.4
+0.6
N.D.
complex community
Community=guar; Passage=4
+0.3
+0.8
+1.2
+0.1
N.D.
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