Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22170 and PS417_22175 are separated by 5 nucleotidesPS417_22175 and PS417_22180 are separated by 178 nucleotidesPS417_22180 and PS417_22185 are separated by 139 nucleotidesPS417_22185 and PS417_22190 are separated by 207 nucleotides PS417_22170: PS417_22170 - acetyltransferase, at 4,803,336 to 4,803,737 _22170 PS417_22175: PS417_22175 - amino acid transporter LysE, at 4,803,743 to 4,804,342 _22175 PS417_22180: PS417_22180 - superoxide dismutase, at 4,804,521 to 4,805,117 _22180 PS417_22185: PS417_22185 - hypothetical protein, at 4,805,257 to 4,805,442 _22185 PS417_22190: PS417_22190 - diguanylate cyclase, at 4,805,650 to 4,807,701 _22190
Group Condition PS417_22170 PS417_22175 PS417_22180 PS417_22185 PS417_22190
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.4 N.D. N.D. -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.9 N.D. N.D. -1.7
stress methylglyoxal 0.032 vol% +0.0 -3.4 N.D. N.D. -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.9 N.D. N.D. -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.8 N.D. N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.1 N.D. N.D. -2.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.4 N.D. N.D. -1.6
phage P. simiae ORA MOI 0.1 +0.3 -2.2 N.D. N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -0.7 N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.6 N.D. N.D. -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.7 N.D. N.D. -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -0.1 N.D. N.D. -1.1
phage P. simiae OR Antrim MOI 10 +0.4 -1.7 N.D. N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.1 N.D. N.D. -2.0
soil soil sample 2; outgrowth in LB -0.4 -1.7 N.D. N.D. +0.2
soil soil sample 7; outgrowth in LB +0.7 -2.7 N.D. N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.7 N.D. N.D. -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.5 N.D. N.D. -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +1.0 N.D. N.D. -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -1.3 N.D. N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +1.0 N.D. N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +1.0 N.D. N.D. -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.8 N.D. N.D. +1.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -0.2 N.D. N.D. +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.8 N.D. N.D. +2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +1.3 N.D. N.D. -0.2
ecofab LB in EcoFAB_3.5mL -0.2 +0.6 N.D. N.D. +1.4
soil soil sample 6; outgrowth in LB -0.0 +1.7 N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.0 +0.0 N.D. N.D. +1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +3.1 N.D. N.D. +0.2
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