Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_22135 and PS417_22140 overlap by 8 nucleotidesPS417_22140 and PS417_22145 are separated by 180 nucleotidesPS417_22145 and PS417_22150 are separated by 104 nucleotidesPS417_22150 and PS417_22155 are separated by 115 nucleotides PS417_22135: PS417_22135 - glucose/xylose ABC transporter, permease component 1 (from data), at 4,795,640 to 4,796,485 _22135 PS417_22140: PS417_22140 - glucose/xylose ABC transporter, permease component 2 (from data), at 4,796,478 to 4,797,386 _22140 PS417_22145: PS417_22145 - glucose/xylose ABC transporter, periplasmic substrate-binding component (from data), at 4,797,567 to 4,798,853 _22145 PS417_22150: PS417_22150 - D-mannose isomerase (EC 5.3.1.7) (from data), at 4,798,958 to 4,800,217 _22150 PS417_22155: PS417_22155 - ATPase, at 4,800,333 to 4,801,178 _22155
Group Condition PS417_22135 PS417_22140 PS417_22145 PS417_22150 PS417_22155
carbon source D-Glucose-6-Phosphate (C) -3.8 -3.4 -3.2 -0.5 +0.2
carbon source D-Glucose-6-Phosphate (C) -2.3 -2.2 -2.0 -0.7 +0.3
root root sample 6; outgrowth in LB -2.4 -2.2 -2.1 +0.6 -0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.0 -1.4 -1.6 -0.3 +0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -1.6 -1.1 -1.9 +0.3 -0.8
carbon source D-Xylose (C) -1.6 -1.8 -1.6 +0.1 -0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 -1.5 -1.7 +0.3 -0.0
carbon source D-Mannose (C) -0.1 -0.3 -1.2 -3.3 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 -1.9 -1.2 +0.2 -0.2
carbon source D-Xylose (C) -1.6 -1.8 -1.8 +0.4 +0.2
carbon source D-Mannose (C) -0.0 +0.1 -0.8 -3.5 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -1.4 -1.5 -1.3 +0.4 -0.1
soil soil sample 4; outgrowth in LB -2.0 -1.0 -0.5 -0.1 -0.1
soil soil sample 2; outgrowth in LB -1.0 -0.6 -1.0 -0.6 -0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 -1.4 -0.9 +0.2 +0.2
rhizosphere rhizosphere sample 8; outgrowth in LB -1.1 -1.0 -1.1 -0.1 +0.1
soil soil sample 6; outgrowth in LB -1.3 -0.9 -1.2 +0.3 -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 -1.1 -0.4 +0.5 -0.2
soil soil sample 7; outgrowth in LB -0.9 -0.9 -1.1 +0.5 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.8 -0.7 +0.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -0.7 -0.7 -0.4 -0.0
soil soil sample 5; outgrowth in LB -0.9 -0.7 -0.8 +1.1 -0.4
carbon source D-Fructose (C) -0.6 -0.7 -0.6 +0.3 +0.1
nophagecontrol Only library -0.1 -0.4 -0.1 +0.8 -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.1 -0.4 +0.8 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.1 +0.4 +1.0 -1.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.0 +0.5 +0.2 -0.7
carbon source D-Galactose (C) +0.5 +0.5 +0.8 -0.1 +0.3
carbon source D-Glucosamine Hydrochloride (C) +7.3 +7.4 +7.7 +0.0 -0.2
carbon source D-Glucosamine Hydrochloride (C) +7.9 +8.0 +8.3 -0.5 -0.3
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