Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_22110	PS417_22115	PS417_22120	PS417_22125	PS417_22130
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.1	-1.3	-2.3	-1.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	-1.1	-1.7	-1.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	-0.6	-2.4	-2.0
root	root sample 6; outgrowth in LB	N.D.	+1.2	-0.2	-2.0	-3.4
carbon source	D-Glucose-6-Phosphate (C)	N.D.	+0.7	-0.1	-0.9	-3.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.9	-0.1	-1.7	-1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+1.1	-1.2	-1.8	-1.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.9	-0.3	-1.3	-0.8
soil	soil sample 5; outgrowth in LB	N.D.	-0.9	+0.5	-0.9	-1.8
carbon source	D-Xylose (C)	N.D.	-0.6	+0.1	-0.3	-2.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.3	-0.3	-1.1	-1.8
soil	soil sample 3; outgrowth in LB	N.D.	-3.2	+0.2	-0.2	+0.2
carbon source	D-Xylose (C)	N.D.	-0.8	+0.0	-0.1	-1.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.0	+0.5	-1.4	-1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.5	-0.4	-0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-1.7	-0.5	-0.1	+0.1
carbon source	D-Glucose-6-Phosphate (C)	N.D.	+0.1	+0.1	-0.3	-2.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.0	-0.9	-0.7	-0.6
carbon source	Gly-Glu (C)	N.D.	-2.0	+0.1	+0.0	-0.4
carbon source	Gly-Glu (C)	N.D.	-2.5	-0.1	+0.1	+0.3
soil	soil sample 7; outgrowth in LB	N.D.	-0.0	+0.1	-1.1	-1.1
carbon source	L-Valine (C)	N.D.	-1.6	-0.6	+0.4	-0.2
soil	soil sample 4; outgrowth in LB	N.D.	+0.3	+0.7	-0.6	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.9	+0.9	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.8	+0.9	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.2	+0.1	+0.2	+0.7
nitrogen source	Adenine (N)	N.D.	+0.9	-0.6	-0.1	+0.6
stress	Phosphomycin 0.001 mg/ml	N.D.	+2.0	-0.4	+0.1	-0.2
carbon source	D-Glucosamine Hydrochloride (C)	N.D.	-0.2	+0.1	+0.2	+7.4
carbon source	D-Glucosamine Hydrochloride (C)	N.D.	-0.1	+0.1	+0.6	+8.1