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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF429 and GFF430 are separated by 40 nucleotides
GFF430 and GFF431 are separated by 148 nucleotides
GFF431 and GFF432 are separated by 181 nucleotides
GFF432 and GFF433 are separated by 220 nucleotides
GFF429 - RND efflux system, inner membrane transporter, at 465,089 to 468,358
GFF429
GFF430 - RND efflux system, membrane fusion protein, at 468,399 to 469,649
GFF430
GFF431 - Esterase/lipase, at 469,798 to 470,694
GFF431
GFF432 - Probable transcription regulator protein of MDR efflux pump cluster, at 470,876 to 471,790
GFF432
GFF433 - Flagellar brake protein YcgR, at 472,011 to 472,766
GFF433
Group
Condition
GFF429
GFF430
GFF431
GFF432
GFF433
complex community
Community=Kojac gum; Passage=4
-0.0
+0.1
-3.0
-0.3
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.3
-0.2
-2.9
-0.4
-0.1
complex community
Community=arabino-guar; Passage=4
-0.0
-0.1
-3.2
+0.2
-0.0
complex community
Community=Locust bean gum; Passage=1
+0.1
-0.1
-3.2
+0.1
+0.0
complex community
Community=guar; Passage=4
+0.1
+0.2
-3.0
-0.1
-0.2
complex community
Community=guar; Passage=4
+0.2
-0.4
-3.2
+0.4
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.3
-3.1
+0.5
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.6
-2.8
-0.2
+0.2
complex community
Community=arabino-guar; Passage=4
+0.1
+0.2
-3.1
+0.3
+0.1
complex community
Community=arabino-guar; Passage=4
+0.1
-0.1
-2.1
-0.2
-0.1
complex community
Community=Kojac gum; Passage=1
-0.0
-0.1
-2.1
+0.0
-0.0
complex community
Community=guar; Passage=4
+0.1
+0.1
-3.0
+0.3
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.4
-1.6
-0.1
+0.1
phage
phage_bap4
-0.0
+0.1
-1.9
-0.1
-0.0
complex community
Community=arabino-guar; Passage=4
+0.2
-0.4
-1.8
+0.4
+0.3
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
-0.0
-1.2
+0.0
+0.2
no phage control
no phage control
+0.2
+0.1
-1.5
+0.1
-0.0
phage
phage_bap4
+0.1
-0.0
-1.0
-0.0
-0.1
no phage control
no phage control
+0.2
-0.0
-1.2
+0.2
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.0
-1.2
+0.3
-0.0
no phage control
no phage control
+0.0
+0.1
-1.1
+0.0
-0.1
no phage control
no phage control
+0.0
+0.2
-1.3
+0.0
+0.2
phage
phage_bap4
+0.0
+0.3
-1.0
-0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
-0.0
-1.1
+0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.2
-0.8
-0.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.1
-1.0
+0.2
+0.2
phage
phage_bap4
+0.0
+0.3
-0.8
+0.0
+0.1
phage
phage_bap4
+0.1
+0.2
-0.6
+0.1
+0.2
phage
phage_bap4
+0.1
+0.3
-0.4
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.1
+0.7
+0.3
+0.1
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