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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF4304 and GFF4305 overlap by 4 nucleotides
GFF4305 and GFF4306 overlap by 4 nucleotides
GFF4306 and GFF4307 overlap by 4 nucleotides
GFF4307 and GFF4308 are separated by 22 nucleotides
GFF4304 - IncF plasmid conjugative transfer pilus assembly protein TraU, at 4,313,465 to 4,314,478
GFF4304
GFF4305 - hypothetical protein, at 4,314,475 to 4,314,762
GFF4305
GFF4306 - hypothetical protein, at 4,314,759 to 4,315,418
GFF4306
GFF4307 - Conjugative signal peptidase TrhF, at 4,315,415 to 4,315,963
GFF4307
GFF4308 - hypothetical protein, at 4,315,986 to 4,316,672
GFF4308
Group
Condition
GFF4304
GFF4305
GFF4306
GFF4307
GFF4308
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.3
-0.6
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
-0.0
-0.1
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
-0.3
-0.1
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.1
-0.0
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.0
+0.1
-0.3
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
-0.0
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.1
-0.0
+0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
-0.2
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.1
+0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.1
-0.0
+0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
-0.1
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.1
+0.2
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
+0.0
-0.1
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.1
+0.2
-0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.0
+0.1
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
-0.0
+0.2
-0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.1
+0.2
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.0
+0.2
+0.1
+0.1
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