Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22040	PS417_22045	PS417_22050	PS417_22055	PS417_22060
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.1	-2.7	N.D.	-4.1
phage	P. simiae ORA MOI 10	-0.1	-0.2	-0.7	N.D.	-3.1
phage	P. simiae ORA MOI 0.1	+0.0	+0.0	-0.2	N.D.	-3.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.0	-0.8	N.D.	-3.9
phage	P. simiae OR Antrim MOI 1	-0.4	+0.2	-0.1	N.D.	-2.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.8	-0.1	+0.4	N.D.	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.1	-2.5	N.D.	-1.0
seeds	Growth on radish seeds for 24 hours	-0.6	-0.4	-0.6	N.D.	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.3	-0.8	N.D.	-2.1
seeds	Growth on radish seeds for 72 hours	-0.1	-0.2	-0.0	N.D.	-2.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	+0.0	-1.0	N.D.	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.1	-1.6	N.D.	-1.4
seeds	Growth on radish seeds for 72 hours	+0.1	+0.0	-0.2	N.D.	-2.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	-0.0	-0.2	N.D.	-2.0
carbon source	L-Valine (C)	+0.7	+0.1	+1.6	N.D.	-3.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.1	+0.1	N.D.	-2.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	+0.4	-0.6	N.D.	-2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.3	-1.2	N.D.	-0.6
phage	P. simiae OR Antrim MOI 10	+0.5	-0.0	+1.0	N.D.	-2.1
phage	JP1 MOI 1	+0.6	+0.4	+0.7	N.D.	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.1	-0.4	N.D.	+1.5
phage	JP1 MOI 0.1	-0.2	+0.3	-1.2	N.D.	+1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.3	-0.6	N.D.	+1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	-0.1	-1.3	N.D.	+1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	+0.1	-1.0	N.D.	+1.6
phage	P. simiae ORA MOI 1	+0.4	+0.1	-0.8	N.D.	+1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	+0.3	-0.7	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+2.2	-0.2	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.7	+1.8	-1.0	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.5	+0.4	N.D.	+1.8