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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF4297 and GFF4298 overlap by 20 nucleotides
GFF4298 and GFF4299 are separated by 17 nucleotides
GFF4299 and GFF4300 overlap by 1 nucleotides
GFF4300 and GFF4301 are separated by 1 nucleotides
GFF4297 - hypothetical protein, at 4,304,321 to 4,304,581
GFF4297
GFF4298 - IncF plasmid conjugative transfer protein TraG, at 4,304,562 to 4,307,840
GFF4298
GFF4299 - IncF plasmid conjugative transfer pilus assembly protein TraH, at 4,307,858 to 4,309,300
GFF4299
GFF4300 - IncF plasmid conjugative transfer pilus assembly protein TraF, at 4,309,300 to 4,310,205
GFF4300
GFF4301 - hypothetical protein, at 4,310,207 to 4,310,620
GFF4301
Group
Condition
GFF4297
GFF4298
GFF4299
GFF4300
GFF4301
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-1.1
+0.0
+0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
+0.0
+0.0
-0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.5
+0.0
-0.0
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
-0.0
-0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.0
+0.1
-0.1
-0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
+0.0
+0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.0
-0.0
+0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.5
-0.2
-0.1
+0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.0
+0.0
+0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
+0.0
-0.2
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
-0.0
-0.1
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.0
-0.0
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.0
-0.1
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
+0.1
-0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.0
-0.0
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.1
-0.1
-0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.1
+0.0
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
+0.0
+0.0
+0.1
+0.1
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