Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21965 and PS417_21970 are separated by 301 nucleotidesPS417_21970 and PS417_21975 are separated by 195 nucleotidesPS417_21975 and PS417_21980 are separated by 158 nucleotidesPS417_21980 and PS417_21985 are separated by 84 nucleotides PS417_21965: PS417_21965 - GNAT family acetyltransferase, at 4,763,417 to 4,763,935 _21965 PS417_21970: PS417_21970 - AraC family transcriptional regulator, at 4,764,237 to 4,764,719 _21970 PS417_21975: PS417_21975 - glutamate-pyruvate aminotransferase, at 4,764,915 to 4,766,126 _21975 PS417_21980: PS417_21980 - permease DsdX, at 4,766,285 to 4,767,637 _21980 PS417_21985: PS417_21985 - gluconokinase, at 4,767,722 to 4,768,255 _21985
Group Condition PS417_21965 PS417_21970 PS417_21975 PS417_21980 PS417_21985
nitrogen source Ammonium chloride (N) +0.1 N.D. -0.2 -1.9 N.D.
nitrogen source Urea (N) +0.2 N.D. -0.2 -1.8 N.D.
carbon source D-Glucose (C) -0.1 N.D. -0.0 -1.7 N.D.
soil soil sample 6; outgrowth in LB -0.4 N.D. -0.4 -0.8 N.D.
carbon source D-Gluconic Acid (C) -0.0 N.D. -0.3 -1.3 N.D.
carbon source D-Glucose (C) +0.0 N.D. -0.1 -1.5 N.D.
soil soil sample 5; outgrowth in LB -0.5 N.D. -0.2 -0.8 N.D.
carbon source D-Glucose (C) -0.0 N.D. -0.1 -1.3 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.1 N.D. -0.2 -1.2 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 N.D. -0.4 -0.7 N.D.
motility outer cut, LB soft agar motility assay -0.0 N.D. -1.0 -0.3 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 N.D. -0.2 -1.0 N.D.
carbon source L-Valine (C) -0.4 N.D. -0.3 -0.6 N.D.
soil soil sample 3; outgrowth in LB -0.2 N.D. -0.2 -0.7 N.D.
carbon source D-Gluconic Acid (C) +0.1 N.D. -0.1 -1.1 N.D.
motility outer cut, LB soft agar motility assay +0.0 N.D. -0.9 -0.2 N.D.
nitrogen source nitrate (N) +0.1 N.D. +0.0 -1.1 N.D.
motility inner cut, LB soft agar motility assay +0.1 N.D. -0.9 -0.2 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. +0.1 -1.1 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.2 N.D. -0.3 -0.7 N.D.
phage P. simiae OR Antrim MOI 0.1 +0.2 N.D. -0.3 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. -0.7 +0.2 N.D.
phage JP1 MOI 1 -0.4 N.D. -0.4 +0.4 N.D.
stress methylglyoxal 0.032 vol% +0.4 N.D. -0.5 +0.3 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 N.D. -0.4 +0.8 N.D.
stress Gentamicin 0.008 mg/ml +0.8 N.D. -0.4 +0.2 N.D.
phage JP1 MOI 10 +0.1 N.D. -0.2 +0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 N.D. +0.3 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 N.D. +0.2 +0.4 N.D.
nitrogen source Adenine (N) +0.0 N.D. +0.1 +2.1 N.D.
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