Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21870	PS417_21875	PS417_21880	PS417_21885	PS417_21890
phage	P. simiae OR Antrim MOI 10	-2.6	+0.0	-0.1	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.5	-0.3	N.D.	-0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-2.1	-0.1	-0.1	N.D.	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	-0.8	-0.2	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.3	-0.5	N.D.	-0.5
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-1.6	+0.3	+0.2	N.D.	-0.7
phage	P. simiae Grant Run MOI 10	-1.0	-0.5	-0.5	N.D.	+0.4
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-1.1	+0.1	-0.4	N.D.	-0.3
stress	methylglyoxal 0.032 vol%	-0.9	+0.2	+0.2	N.D.	-0.6
phage	Wcs_1	+0.3	-0.7	-0.8	N.D.	+0.0
liquid stress	Scopoletin 3 mM; liquid stress	-1.1	+0.1	-0.4	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	+0.6	-0.0	N.D.	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.7	-0.3	N.D.	-0.3
supernatant control	Vogels_fungal_media 0.1X	-1.0	+0.4	+0.3	N.D.	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5	-0.4	+0.1	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.2	+0.2	N.D.	+0.6
phage	JP1 MOI 10	+0.3	-0.3	-0.7	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-1.0	+0.1	N.D.	+0.4
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.5	+0.4	-0.2	N.D.	-0.7
soil	soil sample 2; outgrowth in LB	-0.7	-0.3	+0.2	N.D.	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	-0.2	-0.6	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.8	-0.4	-0.5	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.9	+0.4	-0.3	N.D.	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	+0.2	-0.6	N.D.	+0.3
phage	JP1 MOI 10	+1.0	-0.4	+0.1	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.8	+0.6	N.D.	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.8	+0.1	N.D.	-0.4
stress	Aluminum chloride 4 mM	+1.1	+0.4	-0.1	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.4	+0.2	N.D.	+1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.6	+0.5	N.D.	+1.1