Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21850	PS417_21855	PS417_21860	PS417_21865	PS417_21870
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.1	-0.3	N.D.	-0.0	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.2	N.D.	-0.0	-1.2
soil	soil sample 4; outgrowth in LB	-2.1	-0.4	N.D.	-0.6	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7	-1.0	N.D.	-0.7	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5	-0.2	N.D.	-0.3	-0.7
phage	P. simiae OR Antrim MOI 10	+0.6	-0.2	N.D.	-0.3	-2.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.9	N.D.	+0.5	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.4	-0.2	N.D.	+0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-1.3	N.D.	+0.7	-0.5
nophagecontrol	Only library	-1.5	-0.4	N.D.	+0.6	-0.4
soil	soil sample 5; outgrowth in LB	-2.7	+0.5	N.D.	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	-1.6	N.D.	+0.6	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-1.7	+0.2	N.D.	+0.4	-0.4
phage	JP1 MOI 0.1	-0.8	-1.3	N.D.	+0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.6	N.D.	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.7	+0.1	N.D.	-0.2	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	+0.4	N.D.	-0.6	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-0.1	N.D.	-0.3	-1.4
phage	P. simiae OR1 MOI 0.1	-1.8	-0.1	N.D.	-0.0	+1.2
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.4	+0.3	N.D.	+0.2	-1.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.9	N.D.	+0.5	-0.8
seeds	Growth on radish seeds for 72 hours	+1.4	-0.8	N.D.	-0.4	-0.5
stress	Gentamicin 0.008 mg/ml	-1.4	+0.3	N.D.	+0.2	+0.7
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+1.1	-0.1	N.D.	+0.3	-1.1
carbon source	L-Valine (C)	+1.2	-0.8	N.D.	+0.6	-0.7
phage	P. simiae Grant Run MOI 10	+0.8	+0.5	N.D.	+0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.7	N.D.	+0.6	+1.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+1.0	N.D.	+0.4	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.4	-0.5	N.D.	+0.3	+0.3
seeds	Growth on radish seeds for 72 hours	+3.2	+0.2	N.D.	+0.1	-0.7