Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21845	PS417_21850	PS417_21855	PS417_21860	PS417_21865
soil	soil sample 4; outgrowth in LB	-0.4	-2.1	-0.4	N.D.	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	-1.0	-1.6	N.D.	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	-0.7	-1.0	N.D.	-0.7
nitrogen source	Adenine (N)	-0.4	-1.6	-0.3	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-1.2	-0.9	N.D.	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-2.4	-0.2	N.D.	+0.4
soil	soil sample 5; outgrowth in LB	+0.1	-2.7	+0.5	N.D.	+0.1
phage	JP1 MOI 0.1	-0.1	-0.8	-1.3	N.D.	+0.4
stress	Gentamicin 0.008 mg/ml	-0.8	-1.4	+0.3	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.8	-1.3	N.D.	+0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7	+0.1	-1.3	N.D.	+0.5
nophagecontrol	Only library	+0.0	-1.5	-0.4	N.D.	+0.6
phage	Wcs_1	-1.2	+1.2	-0.7	N.D.	-0.1
seeds	Growth on radish seeds for 72 hours	-1.1	+1.4	-0.8	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-1.4	+0.3	N.D.	-0.3
seeds	Growth on radish seeds for 24 hours	-0.3	+0.9	-1.1	N.D.	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	-1.7	+0.2	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.9	+0.7	N.D.	+0.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+1.1	-1.1	-0.3	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-1.1	+0.6	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.0	-1.2	-0.2	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.8	-1.0	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.5	-0.9	N.D.	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.9	-0.8	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	+0.9	-0.1	N.D.	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+2.4	-0.5	N.D.	+0.3
seeds	Growth on radish seeds for 72 hours	+0.7	+0.9	+0.7	N.D.	+0.1
phage	P. simiae ORA MOI 0.1	+0.6	+1.3	+0.3	N.D.	+0.2
carbon source	L-Valine (C)	+1.5	+1.2	-0.8	N.D.	+0.6
seeds	Growth on radish seeds for 72 hours	+0.7	+3.2	+0.2	N.D.	+0.1