Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21795	PS417_21800	PS417_21805	PS417_21810	PS417_21815
phage	P. simiae ORA MOI 10	-0.6	-0.7	-0.0	N.D.	-0.2
stress	methylglyoxal 0.032 vol%	-1.0	-0.3	-0.1	N.D.	+0.2
phage	P. simiae OR Antrim MOI 0.1	-0.3	-0.8	-0.1	N.D.	+0.2
phage	P. simiae ORA MOI 0.1	+0.3	-0.8	+0.0	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.6	-0.2	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.4	+0.0	N.D.	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	+0.1	+0.3	N.D.	+0.2
phage	P. simiae OR1 MOI 0.1	+0.7	-0.8	-0.4	N.D.	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.7	+0.3	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.7	+0.1	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	+0.6	+0.3	N.D.	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	-0.2	+0.5	-0.3	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	+0.5	-0.3	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.1	+0.9	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.1	-0.6	N.D.	+0.3
phage	JP1 MOI 10	+1.0	+0.2	-0.2	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.9	-0.3	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.4	+0.3	N.D.	+0.4
carbon source	L-Valine (C)	+0.0	-0.2	+0.4	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.6	+0.5	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.5	-0.2	N.D.	+0.0
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.2	+0.6	-0.1	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.7	+0.2	N.D.	-0.0
stress	Phosphomycin 0.003 mg/ml	+0.1	+0.5	+0.4	N.D.	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.6	+0.3	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.5	+0.4	N.D.	+0.2
carbon source	L-Valine (C)	+0.8	+0.2	-0.1	N.D.	+0.5
seeds	Growth on radish seeds for 72 hours	+0.5	+0.1	+0.6	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.3	+0.1	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6	+0.5	+0.5	N.D.	+0.0