Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21765	PS417_21770	PS417_21775	PS417_21780	PS417_21785
soil	soil sample 2; outgrowth in LB	N.D.	N.D.	-0.0	-1.9	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	N.D.	+0.0	-1.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.1	-1.2	-0.2
phage	JP1 MOI 10	N.D.	N.D.	+0.2	-0.7	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.1	-1.1	+0.0
phage	Wcs_0.1	N.D.	N.D.	+0.4	-0.7	-0.4
phage	JP1 MOI 10	N.D.	N.D.	+0.0	-1.0	+0.3
phage	P. simiae ORA MOI 0.1	N.D.	N.D.	-0.5	-0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.4	-0.9	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	-0.4	-0.5
solid stress	Fraxetin 3 mM; solid stress	N.D.	N.D.	+0.4	-1.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.2	-0.8	+0.2
motility	inner cut, LB soft agar motility assay	N.D.	N.D.	+0.2	-0.9	+0.4
soil	soil sample 4; outgrowth in LB	N.D.	N.D.	+0.3	-0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.3	-0.7	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.4	+0.6	-0.3
phage	P. simiae Grant Run MOI 0.1	N.D.	N.D.	-0.4	+0.7	-0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	-0.0	+0.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.0	-0.5	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	-0.7	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.3	-0.3	+0.5
soil	soil sample 5; outgrowth in LB	N.D.	N.D.	+0.2	+0.8	-0.3
solid stress	80% Methanol 2 mM; solid stress	N.D.	N.D.	-0.1	+0.9	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.2	+1.0	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.0	+0.7	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	+0.3	+0.7	+0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	N.D.	+0.1	+1.2	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	-0.1	+1.4	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	+0.3	+0.6	+0.5
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	+0.2	+1.6	+0.6