Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21760	PS417_21765	PS417_21770	PS417_21775	PS417_21780
stress	methylglyoxal 0.032 vol%	-2.0	N.D.	N.D.	+0.0	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.1	N.D.	N.D.	-0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.0	N.D.	N.D.	-0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	N.D.	N.D.	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	N.D.	N.D.	+0.1	-1.2
soil	soil sample 2; outgrowth in LB	+0.6	N.D.	N.D.	-0.0	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	N.D.	N.D.	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	N.D.	N.D.	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	N.D.	N.D.	+0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	N.D.	N.D.	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.1	N.D.	N.D.	+0.2	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.2	N.D.	N.D.	+0.3	+0.7
phage	P. simiae Grant Run MOI 0.1	-0.5	N.D.	N.D.	-0.4	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	N.D.	N.D.	+0.4	-0.9
seeds	Growth on radish seeds for 72 hours	-1.8	N.D.	N.D.	+0.2	+1.6
soil	soil sample 5; outgrowth in LB	-0.9	N.D.	N.D.	+0.2	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	N.D.	N.D.	-0.0	+1.0
liquid stress	Scopoletin 2 mM; liquid stress	+0.8	N.D.	N.D.	+0.1	-0.8
phage	JP1 MOI 10	+0.7	N.D.	N.D.	+0.2	-0.7
phage	JP1 MOI 10	+1.2	N.D.	N.D.	+0.0	-1.0
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.0	N.D.	N.D.	+0.1	+1.2
phage	Wcs_0.1	+0.7	N.D.	N.D.	+0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4	N.D.	N.D.	-0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	N.D.	N.D.	-0.1	+1.4
phage	P. simiae Grant Run MOI 10	+0.9	N.D.	N.D.	-0.2	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	N.D.	N.D.	-0.2	+0.7
carbon source	Carbon source L-Ornithine 5 mM	+0.8	N.D.	N.D.	+0.3	+0.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	+0.6	N.D.	N.D.	+0.3	+0.7
carbon source	Trisodium citrate (C)	+0.9	N.D.	N.D.	+0.1	+0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.6	N.D.	N.D.	+0.3	+0.4