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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF423 and GFF424 overlap by 4 nucleotides
GFF424 and GFF425 overlap by 4 nucleotides
GFF425 and GFF426 overlap by 4 nucleotides
GFF426 and GFF427 are separated by 122 nucleotides
GFF423 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 459,259 to 459,822
GFF423
GFF424 - Cobalamin synthase (EC 2.7.8.26), at 459,819 to 460,613
GFF424
GFF425 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 460,610 to 461,659
GFF425
GFF426 - Cobyric acid synthase (EC 6.3.5.10), at 461,656 to 463,146
GFF426
GFF427 - no description, at 463,269 to 463,499
GFF427
Group
Condition
GFF423
GFF424
GFF425
GFF426
GFF427
complex community
Community=guar; Passage=4
-2.9
-0.6
N.D.
-0.6
-0.1
complex community
Community=Locust bean gum; Passage=4
-1.2
-1.6
N.D.
-0.7
-0.3
complex community
Community=guar; Passage=4
-0.3
-1.3
N.D.
-1.4
-0.1
complex community
Community=guar; Passage=4
-1.0
-1.8
N.D.
-0.4
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.6
-0.7
N.D.
-0.6
-0.4
complex community
Community=arabino-guar; Passage=4
-1.0
+0.0
N.D.
-0.8
-0.5
complex community
Community=arabino-guar; Passage=4
-0.7
-0.6
N.D.
-0.7
-0.2
complex community
Community=arabino-guar; Passage=4
-1.0
-0.4
N.D.
-0.8
+0.1
complex community
Community=arabino-guar; Passage=4
-0.7
-1.2
N.D.
-0.3
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.7
-1.3
N.D.
-0.7
-0.3
complex community
Community=Kojac gum; Passage=4
-0.5
-1.0
N.D.
+0.1
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.5
-0.6
N.D.
-0.8
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.6
-0.0
N.D.
-0.0
-0.2
phage
phage_bap4
-0.5
-0.1
N.D.
-0.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.9
+0.1
N.D.
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
-0.1
N.D.
-0.2
+0.0
complex community
Community=guar; Passage=4
-0.1
-0.4
N.D.
-0.5
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.1
N.D.
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.5
+0.1
N.D.
-0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.4
+0.1
N.D.
-0.1
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.4
-0.1
N.D.
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.6
+0.3
N.D.
-0.1
+0.0
phage
phage_bap4
+0.3
-0.3
N.D.
-0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.4
-0.1
N.D.
-0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.8
+0.2
N.D.
+0.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.3
+0.3
N.D.
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
+0.3
N.D.
+0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
+0.2
N.D.
+0.1
+0.2
phage
phage_bap4
+0.2
-0.2
N.D.
+0.0
+0.3
complex community
Community=Locust bean gum; Passage=1
+0.4
+0.2
N.D.
+0.1
-0.0
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