Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21740 and PS417_21745 are separated by 91 nucleotidesPS417_21745 and PS417_21750 are separated by 695 nucleotidesPS417_21750 and PS417_21755 are separated by 396 nucleotidesPS417_21755 and PS417_21760 are separated by 8 nucleotides PS417_21740: PS417_21740 - ABC transporter for L-Arginine, permease component 1 (from data), at 4,720,809 to 4,721,498 _21740 PS417_21745: PS417_21745 - ABC transporter for L-Arginine, substrate-binding component (from data), at 4,721,590 to 4,722,375 _21745 PS417_21750: PS417_21750 - acetyl-CoA synthetase, at 4,723,071 to 4,725,026 _21750 PS417_21755: PS417_21755 - hypothetical protein, at 4,725,423 to 4,725,692 _21755 PS417_21760: PS417_21760 - hypothetical protein, at 4,725,701 to 4,726,072 _21760
Group Condition PS417_21740 PS417_21745 PS417_21750 PS417_21755 PS417_21760
carbon source L-Arginine (C) -3.5 -3.7 -1.3 +0.2 -0.4
carbon source L-Arginine (C) -3.4 -3.8 -1.1 +0.1 -0.3
carbon source L-Valine (C) +0.7 +0.0 -4.7 -0.1 -0.1
carbon source NAG (C) +0.3 -0.1 -3.3 -0.4 -0.4
carbon source Gly-Glu (C) +0.4 -0.3 -4.2 +0.2 +0.1
carbon source Gly-Glu (C) +0.6 -0.4 -3.8 +0.2 -0.4
carbon source NAG (C) +0.1 -0.1 -3.4 +0.0 -0.4
carbon source Ethanol (C) -0.0 +0.1 -3.9 +0.1 +0.1
carbon source Ethanol (C) +0.2 +0.0 -4.0 +0.4 -0.1
carbon source L-Leucine (C) +0.0 +0.2 -2.7 +0.2 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.1 -1.2 -0.0 -1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.9 -1.0 -0.1 +0.1 -1.0
carbon source L-Leucine (C) +0.2 +0.1 -2.6 -0.0 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.1 -1.3 +0.2 -1.4
stress methylglyoxal 0.032 vol% -0.9 -0.1 -0.2 +0.6 -2.0
carbon source Carbon source L-Ornithine 10 mM -0.9 -1.0 -1.1 +0.0 +0.7
carbon source Carbon source L-Ornithine 5 mM -0.8 -0.9 -1.3 -0.2 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.5 -0.5 +0.5 -1.4
carbon source Carbon source L-Ornithine 5 mM -0.9 -0.6 -1.4 -0.0 +0.9
carbon source Carbon source L-Citrulline 5 mM -0.1 +0.2 -2.0 -0.2 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 -2.2 -0.1 +0.4
carbon source L-Valine (C) +0.9 +0.3 -4.3 +0.5 +1.3
carbon source Carbon source L-Citrulline 5 mM +0.3 -0.0 -2.1 +0.2 +0.5
carbon source Fumarate (C) +0.3 +0.0 -2.1 +0.2 +0.3
carbon source acetate (C) +0.3 +0.1 -2.0 -0.0 +0.4
carbon source Putrescine (C) +0.1 -0.0 -2.0 +0.1 +0.8
carbon source octanoate (C) +1.1 +0.6 -3.4 +0.8 -0.1
carbon source octanoate (C) +0.8 +0.7 -3.6 +0.9 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.0 -0.0 -0.3 -0.9
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.6 -0.0 +0.0 +2.6
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