Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21720	PS417_21725	PS417_21730	PS417_21735	PS417_21740
carbon source	L-Arginine (C)	N.D.	-0.6	+0.2	-2.8	-3.5
carbon source	L-Arginine (C)	N.D.	-0.2	-0.4	-2.4	-3.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.7	-1.2	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.2	-0.6	-1.0	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.0	-0.9	-0.7	-0.9
carbon source	Carbon source L-Ornithine 5 mM	N.D.	-0.8	+0.2	-0.9	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.2	-1.0	-0.8
carbon source	Carbon source L-Ornithine 10 mM	N.D.	-0.5	+0.0	-0.8	-0.9
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-0.3	-0.4	-0.6	-0.9
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-0.2	-0.7	-0.4	-0.8
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-0.6	-0.2	-0.6	-0.7
carbon source	Carbon source L-Ornithine 5 mM	N.D.	-0.4	-0.2	-0.7	-0.8
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-0.5	+0.0	-0.6	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.9	+1.1	-0.9	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.2	-0.7	+0.1	-0.1
carbon source	Carbon source L-Ornithine 10 mM	N.D.	-0.3	+0.2	-0.9	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.6	+0.1	-0.7	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.6	+0.4	-0.6	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.5	-0.5	-0.9
stress	methylglyoxal 0.032 vol%	N.D.	-0.5	+0.6	-0.7	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.5	-0.5	-0.6
carbon source	L-Valine (C)	N.D.	-0.8	-0.3	+0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.5	-0.8	+0.3	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.5	+1.0	+0.2	-0.2
carbon source	L-Alanine (C)	N.D.	-0.4	+0.3	+0.8	+0.6
seeds	Growth on radish seeds for 72 hours	N.D.	-0.4	+1.1	-0.1	+0.8
carbon source	octanoate (C)	N.D.	-0.2	-0.3	+0.8	+1.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.7	-0.3	+0.9
carbon source	Gly-Glu (C)	N.D.	+2.0	+1.7	+0.5	+0.4
carbon source	Gly-Glu (C)	N.D.	+2.4	+2.3	+0.7	+0.6