Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21715	PS417_21720	PS417_21725	PS417_21730	PS417_21735
carbon source	L-Arginine (C)	-0.3	N.D.	-0.6	+0.2	-2.8
carbon source	L-Arginine (C)	-0.3	N.D.	-0.2	-0.4	-2.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	N.D.	-0.7	-1.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	N.D.	-1.2	-0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	N.D.	-0.2	-0.6	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	N.D.	-0.4	-0.2	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	N.D.	-1.9	+1.1	-0.9
carbon source	Carbon source L-Ornithine 5 mM	+0.1	N.D.	-0.8	+0.2	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	N.D.	+0.0	-0.9	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	-1.3	-0.2	+0.1
motility	inner cut, LB soft agar motility assay	-0.1	N.D.	-0.4	-1.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	-0.6	-0.7	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	N.D.	-0.6	+0.4	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-0.5	+0.5	-0.5
stress	methylglyoxal 0.032 vol%	+0.0	N.D.	-0.5	+0.6	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	N.D.	-0.2	+0.6	-0.6
carbon source	L-Valine (C)	+0.4	N.D.	-0.8	-0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	-0.5	+0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	N.D.	+0.5	-0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	N.D.	-0.3	+0.6	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	N.D.	-0.8	+0.6	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	N.D.	-0.5	+0.5	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	N.D.	-0.5	+1.0	+0.2
carbon source	L-Alanine (C)	+0.1	N.D.	-0.4	+0.3	+0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	N.D.	+0.5	+0.8	-0.1
seeds	Growth on radish seeds for 72 hours	+0.3	N.D.	-0.4	+1.1	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.0	N.D.	+0.3	+0.6	+0.6
root	root sample 6; outgrowth in LB	+0.2	N.D.	+0.9	+0.5	+0.2
carbon source	Gly-Glu (C)	-0.8	N.D.	+2.0	+1.7	+0.5
carbon source	Gly-Glu (C)	-0.9	N.D.	+2.4	+2.3	+0.7