Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21685 and PS417_21690 are separated by 39 nucleotidesPS417_21690 and PS417_21695 are separated by 152 nucleotidesPS417_21695 and PS417_21700 overlap by 1 nucleotidesPS417_21700 and PS417_21705 are separated by 51 nucleotides PS417_21685: PS417_21685 - topoisomerase II, at 4,703,881 to 4,704,171 _21685 PS417_21690: PS417_21690 - N-succinylarginine dihydrolase, at 4,704,211 to 4,705,557 _21690 PS417_21695: PS417_21695 - succinylglutamate-semialdehyde dehydrogenase, at 4,705,710 to 4,707,176 _21695 PS417_21700: PS417_21700 - arginine N-succinyltransferase, at 4,707,176 to 4,708,201 _21700 PS417_21705: PS417_21705 - arginine N-succinyltransferase, at 4,708,253 to 4,709,272 _21705
Group Condition PS417_21685 PS417_21690 PS417_21695 PS417_21700 PS417_21705
carbon source L-Arginine (C) N.D. -6.1 -2.8 -5.5 -2.4
carbon source L-Arginine (C) N.D. -5.3 -1.3 -4.0 -2.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.4 -4.1 -1.6 -1.6
carbon source L-Alanine (C) N.D. -1.6 -0.6 -2.3 -4.7
carbon source octanoate (C) N.D. -1.4 -0.5 -1.7 -3.3
carbon source octanoate (C) N.D. -1.2 -0.8 -1.9 -3.1
carbon source L-Alanine (C) N.D. -1.3 +0.1 -2.8 -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.2 -0.4 -2.0 -2.5
carbon source D-Alanine (C) N.D. -0.9 -0.0 -2.9 -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 -0.3 -1.7 -3.2
carbon source D-Trehalose (C) N.D. -1.1 -0.3 -2.1 -2.3
carbon source D,L-Lactate (C) N.D. -0.9 +0.1 -2.3 -2.7
carbon source L-Valine (C) N.D. +0.0 -0.9 -2.5 -2.3
carbon source D-Lactate (C) N.D. -1.3 -0.7 -1.4 -2.2
carbon source L-Valine (C) N.D. -0.7 -0.5 -2.4 -1.9
carbon source D-Glucose (C) N.D. -1.1 -0.5 -1.5 -2.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 +0.6 -2.1 -2.7
carbon source D-Trehalose (C) N.D. -1.3 +0.0 -1.8 -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.3 -0.2 -1.8 -2.1
carbon source D-Gluconic Acid (C) N.D. -1.0 -0.6 -1.6 -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.1 -2.8 -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.7 +0.4 -0.6 -3.2
carbon source pyruvate (C) N.D. -1.1 -0.4 -1.3 -2.3
carbon source D-Galacturonic Acid (C) N.D. -1.1 -0.2 -1.7 -2.1
carbon source D-Alanine (C) N.D. -1.2 -0.4 -1.8 -1.8
carbon source a-Ketoglutaric (C) N.D. -1.1 -0.4 -1.1 -2.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 +0.6 -1.0 -2.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 +0.6 +1.1 -3.5
carbon source Gly-Glu (C) N.D. +3.6 +1.7 +4.5 +4.2
carbon source Gly-Glu (C) N.D. +3.9 +1.7 +5.4 +4.8
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