Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21670	PS417_21675	PS417_21680	PS417_21685	PS417_21690
carbon source	L-Arginine (C)	+0.1	+0.2	-3.1	N.D.	-6.1
carbon source	L-Arginine (C)	+0.2	+0.1	-3.6	N.D.	-5.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.0	-3.1	N.D.	-4.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	-0.1	-2.5	N.D.	-0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.0	+0.2	-2.2	N.D.	-0.4
carbon source	Carbon source L-Citrulline 10 mM	-0.2	-0.2	-1.1	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.0	-1.0	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.1	-0.9	N.D.	-1.2
carbon source	Carbon source L-Citrulline 5 mM	+0.3	+0.1	-1.8	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.0	-0.4	N.D.	-1.4
carbon source	Carbon source L-Ornithine 5 mM	-0.2	+0.1	-2.0	N.D.	-0.1
nophagecontrol	Only library	-1.0	-0.0	-0.8	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	-0.0	N.D.	-1.5
carbon source	octanoate (C)	-0.4	+0.1	-0.7	N.D.	-1.2
carbon source	L-Alanine (C)	-0.3	+0.1	-0.2	N.D.	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.3	-0.2	N.D.	-1.3
carbon source	Carbon source L-Ornithine 10 mM	-0.2	+0.3	-1.9	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.1	-1.2	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	+0.2	N.D.	-1.7
phage	JP1 MOI 10	-0.9	+0.2	+0.7	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.1	+0.1	N.D.	-1.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.2	-0.9	N.D.	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.3	-0.8	N.D.	-0.3
phage	P. simiae OR1 MOI 0.1	+0.7	-0.1	-0.7	N.D.	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	-0.1	-0.7	N.D.	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.0	+1.9	N.D.	-0.4
carbon source	Gly-Glu (C)	-0.3	-0.3	-0.1	N.D.	+3.9
carbon source	Gly-Glu (C)	-0.2	-0.3	+0.2	N.D.	+3.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.2	+1.7	N.D.	+1.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.9	-0.0	+1.4	N.D.	+1.6