Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02145	PS417_02150	PS417_02155	PS417_02160	PS417_02165
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.8	-1.4	-0.5	-1.0	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.2	-1.6	+0.0	-0.8	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.1	-1.3	+0.3	-0.5	-0.0
nophagecontrol	Only library	-0.4	-0.2	-0.0	-2.7	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.7	-1.1	-0.0	-0.6	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.2	-1.2	-0.0	+0.3	+0.3
phage	P. simiae Grant Run MOI 10	+0.0	-0.3	+0.4	-1.4	-1.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.0	-1.6	-0.2	+0.8	+0.5
seeds	Growth on radish seeds for 72 hours	+0.3	+0.3	-0.7	-3.0	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.8	-1.0	+0.4	+0.0	+0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.3	-0.8	+0.3	-0.0	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.0	-0.8	+0.0	+0.8	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.1	-1.4	-0.3	+1.0	+0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.7	-0.8	+0.3	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.4	+0.1	-1.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.2	+0.3	-1.2	-0.5
carbon source	L-Valine (C)	+0.2	+1.3	-0.1	-1.7	-0.3
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.2	-0.1	+0.6	-1.3	+0.7
root	root sample 6; outgrowth in LB	+0.1	+0.4	+0.9	-2.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+0.2	+0.5	-1.4	+0.8
seeds	Growth on radish seeds for 72 hours	-0.1	+0.2	+0.0	-1.2	+1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.8	+0.2	+1.0	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.4	+0.4	+0.6	+1.2
carbon source	L-Valine (C)	+0.2	+1.2	-0.9	+0.7	+0.6
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	-0.3	-0.2	+0.8	+1.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.2	-0.3	+2.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.7	+0.1	+2.3	+0.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.5	-0.1	+1.7	+0.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.1	-0.0	+0.4	+1.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.3	+3.5	-0.2	+0.6