Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4224 and GFF4226 are separated by 54 nucleotidesGFF4226 and GFF4227 are separated by 6 nucleotidesGFF4227 and GFF4228 are separated by 21 nucleotidesGFF4228 and GFF4229 overlap by 4 nucleotides GFF4224 - Transcriptional regulator, AcrR family, at 137,038 to 137,670 GFF4224 GFF4226 - Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84), at 137,725 to 138,714 GFF4226 GFF4227 - Thiamine pyrophosphate-requiring enzymes, at 138,721 to 140,361 GFF4227 GFF4228 - 2-hydroxychromene-2-carboxylate isomerase, at 140,383 to 141,003 GFF4228 GFF4229 - Transcriptional regulator, at 141,000 to 141,641 GFF4229
Group Condition GFF4224 GFF4226 GFF4227 GFF4228 GFF4229
complex community Community=arabino-guar; Passage=4 +0.2 -0.2 +0.0 -3.4 +0.2
complex community Community=Locust bean gum; Passage=4 -0.1 +0.0 -2.1 -0.4 +0.1
complex community Community=guar; Passage=4 -1.1 +0.5 -0.4 -0.6 -0.6
complex community Community=Locust bean gum; Passage=4 +0.2 -0.1 -0.6 -0.5 -0.4
complex community Community=Kojac gum; Passage=4 -0.4 +0.1 -0.9 -0.5 +0.3
complex community Community=Locust bean gum; Passage=4 +0.4 +0.0 -0.8 -0.8 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.9 +0.1 +0.3 +0.1 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.8 -0.0 +0.2 -0.4 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.7 +0.3 -0.2 +0.2 -0.2
complex community Community=Kojac gum; Passage=1 -0.0 +0.0 -0.3 -0.7 +0.4
complex community Community=guar; Passage=4 -0.3 +0.7 -0.6 -0.4 +0.4
no phage control no phage control -0.2 +0.0 +0.5 -0.2 -0.4
complex community Community=guar; Passage=4 -0.1 -0.0 +0.1 +0.6 -0.8
complex community Community=arabino-guar; Passage=4 -0.4 +0.5 +0.2 -1.0 +0.6
complex community Community=guar; Passage=4 -0.1 +0.0 +0.3 +0.2 -0.5
complex community Community=Locust bean gum; Passage=4 -0.1 +0.7 -0.9 +0.8 -0.5
vitamin M9 with Supernatant from Cyptococcus -0.0 +0.5 +0.1 -0.5 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 +0.2 -0.1 +0.6 -0.4
complex community Community=arabino-guar; Passage=4 -0.3 +0.9 -0.1 -0.9 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 +0.3 +0.3 +0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 +0.3 +0.4 -0.2 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.5 +0.1 +0.5 +0.2 +0.0
complex community Community=arabino-guar; Passage=4 +0.0 +0.1 +0.4 -0.5 +0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.3 +0.2 +0.8 -0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 +0.2 +0.8 -0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.0 +0.3 +0.6 +0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 +0.1 +0.5 +0.2 +0.1
phage phage_bap4 -0.1 -0.1 +0.3 +0.5 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.0 +0.2 +0.4 +0.1 +0.4
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.0 +0.5 +0.5 +0.3
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