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Protein
Homologs
Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_21550 and PS417_21555 are separated by 182 nucleotides
PS417_21555 and PS417_21560 are separated by 31 nucleotides
PS417_21560 and PS417_21565 are separated by 16 nucleotides
PS417_21565 and PS417_21570 are separated by 3 nucleotides
PS417_21550: PS417_21550 - hypothetical protein, at 4,680,071 to 4,681,147
_21550
PS417_21555: PS417_21555 - flagellar hook protein FlgE, at 4,681,330 to 4,682,640
_21555
PS417_21560: PS417_21560 - flagellar basal body rod modification protein FlgD, at 4,682,672 to 4,683,397
_21560
PS417_21565: PS417_21565 - flagellar basal body rod protein FlgC, at 4,683,414 to 4,683,857
_21565
PS417_21570: PS417_21570 - flagellar basal body rod protein FlgB, at 4,683,861 to 4,684,268
_21570
Group
Condition
PS417
_21550
PS417
_21555
PS417
_21560
PS417
_21565
PS417
_21570
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.1
-6.8
-2.0
-9.5
-11.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.1
-6.1
-2.6
-9.1
-11.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.1
-7.0
-0.9
-9.4
-11.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.0
-5.5
-2.4
-9.3
-11.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.1
-5.7
-1.4
-9.4
-11.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.2
-5.5
-1.8
-9.2
-11.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.1
-8.2
-1.9
-9.3
-8.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.2
-6.4
-2.0
-9.4
-9.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.1
-7.7
-3.0
-9.4
-6.7
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.2
-5.6
-1.6
-7.6
-11.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.0
-5.6
-2.3
-7.9
-9.9
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.4
-5.5
-2.2
-8.0
-10.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.1
-6.8
-0.8
-7.8
-9.8
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.1
-5.8
-1.2
-9.3
-7.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.3
-5.9
-2.1
-9.3
-6.5
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.0
-4.9
-1.0
-8.1
-8.0
motility
outer cut, LB soft agar motility assay
-0.3
-5.2
-1.2
-6.4
-8.2
motility
outer cut, LB soft agar motility assay
+0.1
-3.8
-1.1
-6.3
-8.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.3
-4.8
-2.4
-7.2
-4.5
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.1
-4.1
-2.5
-4.7
-7.9
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.1
-6.1
-2.3
-6.0
-4.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.0
-4.5
-1.3
-7.2
-5.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.2
-4.2
-1.6
-7.5
-5.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.0
-4.4
-0.6
-6.0
-7.1
motility
outer cut, LB soft agar motility assay
+0.1
-4.2
-1.3
-5.2
-6.7
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-0.0
-4.3
-1.4
-5.0
-5.2
motility
inner cut, LB soft agar motility assay
-0.0
-4.6
-1.5
-5.3
-4.0
motility
inner cut, LB soft agar motility assay
-0.0
-4.0
-0.6
-6.1
-4.0
motility
outer cut, LB soft agar motility assay
-0.1
-4.3
-1.5
-4.5
-3.4
motility
inner cut, LB soft agar motility assay
+0.0
-3.5
-1.5
-4.1
-4.8
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