Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21455 and PS417_21460 are separated by 13 nucleotidesPS417_21460 and PS417_21465 are separated by 105 nucleotidesPS417_21465 and PS417_21470 are separated by 133 nucleotidesPS417_21470 and PS417_21475 are separated by 21 nucleotides PS417_21455: PS417_21455 - 50S ribosomal protein L32, at 4,658,206 to 4,658,388 _21455 PS417_21460: PS417_21460 - metal-binding protein, at 4,658,402 to 4,658,932 _21460 PS417_21465: PS417_21465 - septum formation inhibitor Maf, at 4,659,038 to 4,659,616 _21465 PS417_21470: PS417_21470 - peptidase S49, at 4,659,750 to 4,660,733 _21470 PS417_21475: PS417_21475 - HAD family hydrolase, at 4,660,755 to 4,661,417 _21475
Group Condition PS417_21455 PS417_21460 PS417_21465 PS417_21470 PS417_21475
nitrogen source Glycine (N) N.D. N.D. -0.3 +0.0 -1.6
phage JP1 MOI 1 N.D. N.D. +0.2 -0.2 -1.9
seeds Growth on radish seeds for 72 hours N.D. N.D. -0.5 -0.4 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.1 +0.3 -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.6 -0.1 -0.8
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -0.3 -0.3 -0.9
seeds Growth on radish seeds for 24 hours N.D. N.D. -0.7 -0.1 -0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.8 +0.1 -0.6
phage P. simiae OR Antrim MOI 1 N.D. N.D. -0.5 -0.0 -0.9
stress Gentamicin 0.008 mg/ml N.D. N.D. +0.5 -0.5 -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.1 +0.1 -1.1
soil soil sample 6; outgrowth in LB N.D. N.D. -0.3 +0.3 -1.2
liquid stress Scopoletin 2 mM; liquid stress N.D. N.D. +0.3 +0.0 -1.3
soil soil sample 5; outgrowth in LB N.D. N.D. +0.5 +0.2 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.4 +0.2 -1.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. -1.3 +0.2 +0.7
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. -0.0 +0.5 -0.9
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. +0.5 +0.2 -0.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.9 +0.3 +0.6
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. -0.5 +0.0 +0.8
phage JP1 MOI 10 N.D. N.D. -0.4 -0.2 +1.0
ecofab LB in EcoFAB_3.5mL N.D. N.D. -0.3 +0.2 +0.8
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. N.D. -0.3 +0.1 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -0.5 -0.2 +1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -0.0 -0.1 +1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. +1.2 +0.1 -0.1
motility inner cut, LB soft agar motility assay N.D. N.D. -0.2 +0.3 +1.4
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. -0.0 +0.7 +0.8
phage P. simiae OR1 MOI 0.1 N.D. N.D. -0.1 +0.2 +1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. +0.3 +0.1 +1.3
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PS417_21455
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PS417_21460
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PS417_21470
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