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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF417 and GFF418 are separated by 109 nucleotides
GFF418 and GFF419 are separated by 30 nucleotides
GFF419 and GFF420 are separated by 27 nucleotides
GFF420 and GFF422 are separated by 10 nucleotides
GFF417 - Aspartate aminotransferase (AspB-4) (EC 2.6.1.1), at 451,888 to 453,075
GFF417
GFF418 - Endonuclease III (EC 4.2.99.18), at 453,185 to 453,832
GFF418
GFF419 - hypothetical protein, at 453,863 to 454,711
GFF419
GFF420 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 454,739 to 456,301
GFF420
GFF422 - no description, at 456,312 to 456,452
GFF422
Group
Condition
GFF417
GFF418
GFF419
GFF420
GFF422
complex community
Community=Locust bean gum; Passage=4
-0.5
-0.3
-0.2
-1.4
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.1
+0.3
-1.0
-0.0
complex community
Community=Kojac gum; Passage=4
-0.4
-0.5
+0.3
+0.2
+0.0
phage
phage_bap4
-0.3
-0.1
+0.2
-0.5
+0.2
complex community
Community=guar; Passage=4
-0.9
+0.2
+0.0
+0.6
-0.3
complex community
Community=guar; Passage=4
-0.5
+0.1
-0.3
+0.5
-0.2
complex community
Community=arabino-guar; Passage=4
-0.1
+0.1
+0.0
+0.0
-0.4
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.1
+0.2
-0.2
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
+0.0
+0.3
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
-0.0
+0.2
+0.2
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.0
+0.2
-0.3
-0.1
complex community
Community=arabino-guar; Passage=4
-0.4
-0.3
+0.2
+0.2
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.0
-0.1
+0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.1
-0.2
+0.4
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
+0.1
+0.2
+0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.1
+0.1
+0.2
+0.2
complex community
Community=Locust bean gum; Passage=4
+0.0
+0.3
+0.1
+0.5
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
-0.1
-0.0
+0.4
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.2
-0.1
+0.2
+0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.2
+0.0
+0.0
+0.5
+0.3
phage
phage_bap4
-0.2
+0.3
+0.2
+0.2
+0.2
phage
phage_bap4
-0.1
+0.1
+0.1
+0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.3
-0.2
+0.5
+0.1
phage
phage_bap4
-0.0
+0.1
+0.0
+0.3
+0.3
complex community
Community=Kojac gum; Passage=1
-0.1
+0.1
+0.1
+0.7
-0.0
complex community
Community=guar; Passage=4
-0.7
+0.2
+0.6
+0.9
-0.2
complex community
Community=guar; Passage=4
-1.0
-0.2
+0.4
+1.5
+0.2
complex community
Community=arabino-guar; Passage=4
-0.7
+0.1
+0.1
+1.8
-0.2
complex community
Community=arabino-guar; Passage=4
-0.5
+0.2
+0.5
+1.4
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
+0.1
+0.1
+0.7
+0.1
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