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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Hydrogenophaga sp. GW460-11-11-14-LB1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4180 and GFF4181 are separated by 11 nucleotides
GFF4181 and GFF4182 overlap by 4 nucleotides
GFF4182 and GFF4183 are separated by 12 nucleotides
GFF4183 and GFF4184 overlap by 4 nucleotides
GFF4180 - Conjugative transfer protein TrbJ, at 1,097,068 to 1,097,793
GFF4180
GFF4181 - FIG00961917: hypothetical protein, at 1,097,805 to 1,098,146
GFF4181
GFF4182 - Conjugative transfer protein TrbL, at 1,098,143 to 1,099,519
GFF4182
GFF4183 - Conjugative transfer protein TrbF, at 1,099,532 to 1,100,236
GFF4183
GFF4184 - Conjugative transfer protein TrbG, at 1,100,233 to 1,101,225
GFF4184
Group
Condition
GFF4180
GFF4181
GFF4182
GFF4183
GFF4184
carbon source
Ying_all64 rep A; time point 2
-0.2
-0.8
-0.1
-0.1
-0.1
carbon source
Ying_sugar7 rep C; time point 1
+0.4
-0.8
-0.2
-0.2
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 1
+0.0
-0.5
-0.2
-0.1
+0.0
carbon source
Ying_all64 rep A; time point 3
-0.5
-0.3
-0.0
+0.2
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.6
-0.9
+0.1
+0.0
-0.1
carbon source
Ying_sugar7 rep A; time point 2
+0.7
-0.7
-0.0
-0.0
-0.0
carbon source
Ying_all64 rep B; time point 1
+0.2
+0.2
-0.4
-0.1
-0.0
carbon source
Ying_sugar7 rep B; time point 1
+0.3
-0.3
-0.3
+0.2
-0.0
carbon source
Ying_Others16 rep B; time point 2
+0.6
-0.2
-0.1
-0.1
-0.0
carbon source
Ying_Nucleobase14 rep B; time point 1
+1.0
-0.7
-0.2
-0.1
+0.1
carbon source
Ying_all64 rep B; time point 2
+0.5
-0.4
+0.1
+0.0
-0.0
carbon source
Ying_Others16 rep A; time point 1
+0.3
+0.3
-0.1
-0.1
-0.0
carbon source
Ying_OrganicAcid7 rep A; time point 2
+0.6
-0.2
-0.1
+0.0
+0.1
carbon source
Ying_sugar7 rep B; time point 3
+0.7
-0.2
+0.1
-0.1
+0.0
carbon source
Ying_all64 rep C; time point 2
+1.3
+0.0
-0.3
-0.3
-0.2
carbon source
Ying_Others16 rep B; time point 3
+0.6
+0.1
-0.2
+0.0
-0.1
carbon source
Ying_all64 rep B; time point 3
+0.6
-0.1
+0.0
+0.1
-0.1
carbon source
Ying_Nucleobase14 rep A; time point 1
+0.7
+0.2
-0.2
-0.1
-0.1
carbon source
Ying_Others16 rep A; time point 2
+0.5
+0.2
-0.1
-0.0
-0.1
carbon source
Ying_Others16 rep C; time point 2
+0.5
+0.2
-0.2
+0.0
-0.0
carbon source
Ying_Others16 rep B; time point 1
+1.1
-0.5
+0.0
+0.0
-0.1
carbon source
Ying_OrganicAcid7 rep C; time point 3
+1.0
-0.3
+0.1
-0.2
+0.1
carbon source
Ying_OrganicAcid7 rep A; time point 3
+0.6
+0.2
+0.2
-0.3
+0.2
carbon source
Ying_sugar7 rep A; time point 1
+0.8
+0.1
-0.2
+0.0
+0.1
carbon source
Ying_sugar7 rep C; time point 3
+0.6
+0.3
+0.1
-0.3
+0.1
carbon source
Ying_Others16 rep C; time point 3
+1.0
+0.0
-0.1
-0.1
+0.0
carbon source
Ying_all64 rep C; time point 1
+0.8
+0.0
-0.0
+0.0
+0.0
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.3
+0.5
-0.0
+0.3
+0.0
carbon source
Ying_all64 rep C; time point 3
+1.7
+0.2
-0.2
-0.4
-0.2
carbon source
Ying_AminoAcid20 rep C; time point 2
+0.7
+0.5
-0.1
+0.1
+0.0
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