Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21400 and PS417_21405 are separated by 445 nucleotidesPS417_21405 and PS417_21410 are separated by 63 nucleotidesPS417_21410 and PS417_21415 overlap by 8 nucleotidesPS417_21415 and PS417_21420 are separated by 19 nucleotides PS417_21400: PS417_21400 - TetR family transcriptional regulator, at 4,648,013 to 4,648,666 _21400 PS417_21405: PS417_21405 - hydrolase TatD, at 4,649,112 to 4,649,897 _21405 PS417_21410: PS417_21410 - DNA polymerase III subunit delta', at 4,649,961 to 4,650,950 _21410 PS417_21415: PS417_21415 - thymidylate kinase, at 4,650,943 to 4,651,575 _21415 PS417_21420: PS417_21420 - aminodeoxychorismate lyase, at 4,651,595 to 4,652,740 _21420
Group Condition PS417_21400 PS417_21405 PS417_21410 PS417_21415 PS417_21420
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.1 N.D. N.D. -1.1
rhizosphere rhizosphere sample 8; outgrowth in LB -0.8 -0.2 N.D. N.D. -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.1 N.D. N.D. -1.3
soil soil sample 7; outgrowth in LB +0.3 -0.7 N.D. N.D. -1.1
phage P. simiae OR Antrim MOI 10 -1.6 -0.1 N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 +0.3 N.D. N.D. -0.8
phage P. simiae OR Antrim MOI 0.1 -1.2 -0.2 N.D. N.D. +0.5
solid stress Fraxetin 3 mM; solid stress -1.6 +0.3 N.D. N.D. +0.4
solid stress Fraxetin 2 mM; solid stress -1.5 +0.2 N.D. N.D. +0.4
solid stress Fraxetin 3 mM; solid stress -1.4 +0.0 N.D. N.D. +0.5
phage JP1 MOI 1 -1.6 -0.2 N.D. N.D. +1.0
phage JP1 MOI 1 -1.6 -0.2 N.D. N.D. +1.0
phage P. simiae Grant Run MOI 0.1 -1.3 +0.1 N.D. N.D. +0.5
phage JP1 MOI 10 -1.8 +0.4 N.D. N.D. +0.9
phage JP1 MOI 10 -1.3 +0.4 N.D. N.D. +1.0
phage JP1 MOI 0.1 -1.4 +0.5 N.D. N.D. +1.1
stress R2A with Fusaric 120 ug/mL -0.8 -0.1 N.D. N.D. +1.1
stress R2A with Fusaric 120 ug/mL -0.8 -0.1 N.D. N.D. +1.1
stress R2A with Fusaric 120 ug/mL -1.2 +0.3 N.D. N.D. +1.1
carbon source octanoate (C) +1.2 -0.3 N.D. N.D. -0.7
carbon source octanoate (C) +1.4 -0.5 N.D. N.D. -0.5
stress R2A with Fusaric 120 ug/mL -1.0 +0.3 N.D. N.D. +1.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.3 -0.4 N.D. N.D. +1.2
stress R2A with Fusaric 120 ug/mL -1.0 +0.2 N.D. N.D. +1.4
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.7 -0.0 N.D. N.D. +1.4
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.3 -0.3 N.D. N.D. +1.3
stress R2A with Fusaric 120 ug/mL -0.6 +0.2 N.D. N.D. +1.4
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.3 -0.2 N.D. N.D. +1.8
stress nitrate 200 mM -0.3 +0.2 N.D. N.D. +1.8
phage P. simiae OR1 MOI 0.1 +1.1 -0.2 N.D. N.D. +2.6
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