Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21395 and PS417_21400 are separated by 115 nucleotidesPS417_21400 and PS417_21405 are separated by 445 nucleotidesPS417_21405 and PS417_21410 are separated by 63 nucleotidesPS417_21410 and PS417_21415 overlap by 8 nucleotides PS417_21395: PS417_21395 - radical SAM protein, at 4,646,929 to 4,647,897 _21395 PS417_21400: PS417_21400 - TetR family transcriptional regulator, at 4,648,013 to 4,648,666 _21400 PS417_21405: PS417_21405 - hydrolase TatD, at 4,649,112 to 4,649,897 _21405 PS417_21410: PS417_21410 - DNA polymerase III subunit delta', at 4,649,961 to 4,650,950 _21410 PS417_21415: PS417_21415 - thymidylate kinase, at 4,650,943 to 4,651,575 _21415
Group Condition PS417_21395 PS417_21400 PS417_21405 PS417_21410 PS417_21415
carbon source 2'-Deoxyinosine 5 mM (C) -3.8 -0.2 -0.4 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -3.9 -0.2 -0.1 N.D. N.D.
nitrogen source nitrate (N) -3.9 +0.3 +0.1 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) -2.8 -0.5 -0.1 N.D. N.D.
carbon source Inosine (C) -3.1 +0.1 -0.1 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) -3.0 +0.1 -0.1 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -3.3 +0.4 +0.0 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -2.9 +0.2 -0.1 N.D. N.D.
carbon source Inosine (C) -2.6 -0.1 -0.0 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -2.6 +0.1 +0.0 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -2.7 +0.1 +0.2 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -2.6 -0.1 +0.6 N.D. N.D.
phage JP1 MOI 1 -0.2 -1.6 -0.2 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.8 -1.6 +0.3 N.D. N.D.
phage JP1 MOI 1 -0.2 -1.6 -0.2 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.6 -1.4 +0.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.0 -0.1 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.8 +0.2 -0.2 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -1.7 +0.1 -0.1 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -1.5 +0.1 -0.2 N.D. N.D.
phage P. simiae Grant Run MOI 0.1 -0.4 -1.3 +0.1 N.D. N.D.
phage JP1 MOI 10 -0.2 -1.8 +0.4 N.D. N.D.
phage P. simiae OR Antrim MOI 10 +0.2 -1.6 -0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -0.7 +0.3 N.D. N.D.
phage JP1 MOI 10 -0.1 -1.3 +0.4 N.D. N.D.
carbon source octanoate (C) -1.6 +1.2 -0.3 N.D. N.D.
carbon source octanoate (C) -1.6 +1.4 -0.5 N.D. N.D.
phage JP1 MOI 0.1 +0.3 -1.4 +0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 -0.1 +0.8 N.D. N.D.
phage P. simiae OR1 MOI 0.1 +0.4 +1.1 -0.2 N.D. N.D.
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PS417_21395
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PS417_21400
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