Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21335	PS417_21340	PS417_21345	PS417_21350	PS417_21355
phage	P. simiae OR1 MOI 0.1	-0.1	-0.1	-0.9	N.D.	-1.1
soil	soil sample 5; outgrowth in LB	-0.2	-0.0	-0.4	N.D.	-1.5
phage	JP1 MOI 10	-0.4	-0.1	+0.0	N.D.	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-0.5	N.D.	-0.9
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.3	-0.2	+0.3	N.D.	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.1	+0.0	N.D.	-1.1
carbon source	L-Arabinose (C)	-1.0	-0.5	+0.3	N.D.	+0.1
carbon source	L-Arabinose (C)	-1.0	-0.6	+0.4	N.D.	+0.0
seeds	Growth on radish seeds for 72 hours	+0.4	-0.1	+0.1	N.D.	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	+0.3	N.D.	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.0	+0.4	N.D.	-1.1
carbon source	D-Alanine (C)	+0.3	-0.1	-0.3	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.4	-0.6	N.D.	-0.7
solid stress	Fraxetin 3 mM; solid stress	-0.1	-0.0	+0.7	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	+0.3	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.7	+0.2	N.D.	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	+0.5	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	+0.9	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.2	+1.0	N.D.	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	-0.1	+0.5	N.D.	+0.8
stress	LB_noSalt with Chloride 1100 mM	+0.7	+0.2	+0.4	N.D.	-0.6
stress	Gentamicin 0.008 mg/ml	-0.1	-0.4	+0.4	N.D.	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	-0.3	-0.2	N.D.	+0.8
stress	methylglyoxal 0.032 vol%	-0.5	+0.3	+0.2	N.D.	+0.8
nophagecontrol	Only library	+0.3	+0.2	+0.8	N.D.	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.5	-0.5	N.D.	+0.2
carbon source	L-Valine (C)	+0.3	-0.4	+0.6	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	+0.4	+0.1	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.0	+0.2	N.D.	+2.2
seeds	Growth on radish seeds for 72 hours	+0.0	-0.1	+0.4	N.D.	+2.5