Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21325	PS417_21330	PS417_21335	PS417_21340	PS417_21345
soil	soil sample 7; outgrowth in LB	-1.0	-0.6	-0.2	-0.3	-0.1
carbon source	Carbon source L-Citrulline 5 mM	-0.5	-0.9	-0.3	-0.1	+0.1
carbon source	L-Arabinose (C)	+0.1	-0.5	-1.0	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.8	+0.1	-0.1	-0.1	-0.5
carbon source	L-Arabinose (C)	+0.2	-0.4	-1.0	-0.6	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	-0.8	-0.4	+0.2	-0.3
phage	JP1 MOI 1	-0.4	+0.1	-0.5	+0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.6	-0.7	-0.7	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.4	-0.4	-0.0	-0.5
phage	JP1 MOI 10	-0.6	-0.4	+0.1	+0.5	-0.4
seeds	Growth on radish seeds for 72 hours	-0.8	+0.4	+0.2	-0.1	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-1.2	+0.1	+0.2	+0.0	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.1	-0.8	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.6	+0.3	+0.0	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	+0.2	+0.4	-0.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	+0.3	+0.4	+0.2	+0.2	-0.5
nophagecontrol	Only library	-0.5	-0.1	+0.3	+0.2	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.5	+0.6	+0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.3	+0.4	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+1.0	+0.2	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.1	-0.1	-0.2	+1.0
soil	soil sample 6; outgrowth in LB	+0.8	+0.0	-0.2	+0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.3	-0.1	+0.2	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.7	+0.4	-0.0	+0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.7	-0.0	+0.2	+0.0	+0.6
phage	P. simiae OR Antrim MOI 0.1	+0.2	+0.7	+0.4	+0.3	-0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+1.2	-0.3	+0.2	-0.0
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.7	+0.4	+0.2	+0.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.1	+1.1	+0.4	+0.1
carbon source	L-Valine (C)	+1.8	+0.5	+0.3	-0.4	+0.6