Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4163 and GFF4164 are separated by 4 nucleotidesGFF4164 and GFF4165 are separated by 14 nucleotidesGFF4165 and GFF4166 overlap by 11 nucleotidesGFF4166 and GFF4167 overlap by 4 nucleotides GFF4163 - Phosphopentomutase (EC 5.4.2.7), at 67,700 to 68,908 GFF4163 GFF4164 - Thymidine phosphorylase (EC 2.4.2.4), at 68,913 to 70,232 GFF4164 GFF4165 - Deoxyribose-phosphate aldolase (EC 4.1.2.4), at 70,247 to 71,041 GFF4165 GFF4166 - Cytidine deaminase (EC 3.5.4.5), at 71,031 to 71,501 GFF4166 GFF4167 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 71,498 to 73,120 GFF4167
Group Condition GFF4163 GFF4164 GFF4165 GFF4166 GFF4167
complex community Community=arabino-guar; Passage=4 +0.8 -2.5 N.D. +0.3 -1.2
complex community Community=arabino-guar; Passage=4 -0.3 -1.3 N.D. +0.1 -1.0
complex community Community=guar; Passage=4 +0.4 -0.4 N.D. -2.4 -0.1
complex community Community=Kojac gum; Passage=4 +0.2 -0.7 N.D. -1.3 -0.3
complex community Community=guar; Passage=4 +0.7 -0.0 N.D. -1.1 -1.1
phage phage_bap4 -0.4 +0.3 N.D. -0.5 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.6 N.D. +0.5 -0.5
complex community Community=Locust bean gum; Passage=1 +0.6 -0.9 N.D. +0.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 -0.6 N.D. +0.3 +0.1
complex community Community=arabino-guar; Passage=4 +0.7 -1.1 N.D. +0.2 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 -1.0 N.D. +0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.7 N.D. -0.1 +0.6
complex community Community=Locust bean gum; Passage=4 -0.6 +0.2 N.D. -0.4 +0.4
complex community Community=guar; Passage=4 -0.1 -0.3 N.D. +1.1 -0.8
complex community Community=Kojac gum; Passage=1 +0.5 -0.4 N.D. +0.5 -0.7
complex community Community=guar; Passage=4 +0.9 +0.3 N.D. +0.3 -1.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.4 N.D. +0.3 +0.4
complex community Community=Locust bean gum; Passage=4 +1.0 -0.1 N.D. -0.5 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.3 -0.3 N.D. -0.2 +0.7
phage phage_bap4 +0.0 +0.4 N.D. -0.5 +0.5
vitamin M9 with Supernatant from Cyptococcus -0.5 -0.1 N.D. +0.5 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 -0.4 N.D. +0.2 +0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.5 +0.3 N.D. +0.3 -0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.7 -0.3 N.D. +0.4 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.4 -0.4 N.D. +0.4 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.3 -0.2 N.D. +0.7 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL +0.8 -0.2 N.D. +0.0 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.4 N.D. +0.2 +0.8
complex community Community=Locust bean gum; Passage=4 +1.2 +0.5 N.D. -0.1 +0.3
complex community Community=arabino-guar; Passage=4 +1.4 -0.6 N.D. +1.3 -0.1
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