Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21315 and PS417_21320 are separated by 0 nucleotidesPS417_21320 and PS417_21325 are separated by 180 nucleotidesPS417_21325 and PS417_21330 are separated by 17 nucleotidesPS417_21330 and PS417_21335 overlap by 4 nucleotides PS417_21315: PS417_21315 - hydroxyacid dehydrogenase, at 4,632,898 to 4,633,950 _21315 PS417_21320: PS417_21320 - transcriptional regulator, at 4,633,951 to 4,634,754 _21320 PS417_21325: PS417_21325 - arabinose ABC transporter permease, at 4,634,935 to 4,635,900 _21325 PS417_21330: PS417_21330 - L-arabinose transporter ATP-binding protein, at 4,635,918 to 4,637,417 _21330 PS417_21335: PS417_21335 - sugar ABC transporter substrate-binding protein, at 4,637,414 to 4,638,394 _21335
Group Condition PS417_21315 PS417_21320 PS417_21325 PS417_21330 PS417_21335
solid stress Fraxetin 3 mM; solid stress -0.0 -3.0 +0.0 -0.0 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -2.9 -0.4 +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -2.7 +0.1 +0.0 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -2.8 +0.5 -0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -3.6 +0.5 +0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -2.3 -0.2 +0.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -1.8 -0.5 +0.6 -0.7
carbon source Carbon source L-Citrulline 5 mM +0.1 -0.6 -0.5 -0.9 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -2.3 +0.4 +0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.0 -1.7 -0.5 -0.0 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -2.0 +0.2 +0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -1.5 +0.4 -0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.5 +0.1 +0.2 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.6 +0.2 +0.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -1.8 -0.3 +0.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -2.0 +0.2 +0.1 -0.2
carbon source Inosine (C) -0.3 -1.3 +0.2 -0.2 +0.2
soil soil sample 7; outgrowth in LB +0.1 +0.4 -1.0 -0.6 -0.2
carbon source L-Arabinose (C) -0.2 +1.2 +0.1 -0.5 -1.0
carbon source L-Arabinose (C) -0.2 +1.3 +0.2 -0.4 -1.0
seeds Growth on radish seeds for 72 hours +0.6 -0.4 -0.8 +0.4 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 -0.8 +0.5 -0.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +0.3 +0.7 -0.5 +0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -1.2 +0.5 +1.2 -0.3
phage P. simiae OR1 MOI 0.1 -0.8 +1.0 +0.3 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +1.1 -0.2 -0.3 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -0.7 +0.2 +0.7 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 +0.7 +0.6 +0.2 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.4 -0.3 +1.0 +0.2
carbon source L-Valine (C) +0.0 -1.3 +1.8 +0.5 +0.3
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