Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21290 and PS417_21295 are separated by 70 nucleotidesPS417_21295 and PS417_21300 are separated by 2 nucleotidesPS417_21300 and PS417_21305 are separated by 507 nucleotidesPS417_21305 and PS417_21310 are separated by 177 nucleotides PS417_21290: PS417_21290 - ABC transporter substrate-binding protein, at 4,626,905 to 4,627,720 _21290 PS417_21295: PS417_21295 - electron transfer flavoprotein subunit beta, at 4,627,791 to 4,628,720 _21295 PS417_21300: PS417_21300 - electron transporter RnfB, at 4,628,723 to 4,629,472 _21300 PS417_21305: PS417_21305 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 4,629,980 to 4,631,644 _21305 PS417_21310: PS417_21310 - AraC family transcriptional regulator, at 4,631,822 to 4,632,715 _21310
Group Condition PS417_21290 PS417_21295 PS417_21300 PS417_21305 PS417_21310
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. N.D. N.D. -0.4
carbon source L-Isoleucine (C) -0.5 N.D. N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. N.D. N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 N.D. N.D. N.D. -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.0 N.D. N.D. N.D. -0.7
seeds Growth on radish seeds for 24 hours -0.6 N.D. N.D. N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. N.D. N.D. +0.0
seeds Growth on radish seeds for 72 hours +0.1 N.D. N.D. N.D. -0.4
phage P. simiae ORA MOI 10 -0.4 N.D. N.D. N.D. +0.1
phage P. simiae OR Antrim MOI 1 +0.3 N.D. N.D. N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 N.D. N.D. N.D. +0.3
carbon source 2-Deoxy-D-Ribose (C) -0.4 N.D. N.D. N.D. +0.3
stress 6-methoxy-2(3H)-benzoxazolone 2.5 mM +0.3 N.D. N.D. N.D. -0.3
solid stress 80% Methanol 2 mM; solid stress +0.3 N.D. N.D. N.D. -0.3
phage Wcs_0.1 +0.3 N.D. N.D. N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. N.D. N.D. -0.3
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.4 N.D. N.D. N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 N.D. N.D. N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.4 N.D. N.D. N.D. -0.3
soil soil sample 7; outgrowth in LB +0.4 N.D. N.D. N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. N.D. N.D. +0.5
stress Nalidixic 0.025 mg/ml -0.1 N.D. N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. N.D. N.D. -0.1
supernatant control Vogels_fungal_media 0.1X +0.5 N.D. N.D. N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 N.D. N.D. N.D. +0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. N.D. N.D. +0.1
stress 1-ethyl-3-methylimidazolium acetate 35 mM +0.4 N.D. N.D. N.D. +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 N.D. N.D. N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 N.D. N.D. N.D. +0.4
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